RnoINT0055454 @ rn6
Intron Retention
Gene
ENSRNOG00000014834 | Epc1
Description
enhancer of polycomb homolog 1 [Source:RGD Symbol;Acc:2324280]
Coordinates
chr17:57321873-57323036:-
Coord C1 exon
chr17:57322891-57323036
Coord A exon
chr17:57322080-57322890
Coord C2 exon
chr17:57321873-57322079
Length
811 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
CGAAATGGTTTTACATTTAGCCA
3' ss Score
2.75
Exon sequences
Seq C1 exon
CTTTCAGCTTGGACGCTGAGCAGCCTGATTACGACCTGGATTCTGAGGATGAAGTCTTTGTGAATAAACTGAAGAAGAAAATGGACATCTGCCCAGTGCAGTTTGAGGAGATGATTGACCGGTTAGAAAAAGGCAGCGGTCAGCAG
Seq A exon
GTACAACTTCATGTATGTTTGCGTGTTCTCTGGACTGCTGTGTTATGTGAACAGTACAGTAGTATGGAGGAGGGCTGAGGTAGCACTCTGCAGTTAAAGCGTAGACTCACATCTGCCTAGTCATCACCTGTATAATTTTGAGCATTATGTTTAAATTTTTTGTGCCTCACTTATCCTAGCTGTATATAGAGATAAAAATAATAAACTGGAAGGATATGGTGTCACACACCTTTAATCCCAGAACTTGGAAGGCAGAGGCAGATGGATGGATCTCTGTGAGTTAAAGACCAGCCTCCTCTACATTGTAAGTTCCAGGCCAGCCAAGGCTACATAGTAAGACCCTATGTCAAAGCAAAAAAACTCTCTTTACCTGGCATTTATGTATTTGGTGACCAATAGAAAGTGACTAATACCAAGTCCTAAAGTCATGAAACACAGCAAGCTGTGTGACCTAGGAGTTGGTGTGAGATTATTGTAAAGACTGAGCACAGACGGGCTGGAGGTGTTGCTTAGTCACAGTGCCTGCATAGCACGCGTGTTGCACATGCTCCCCAACACCCAGCAAAGGCGGGTGTGGTAGTTACACCTGCCCGGGTCCTGGTATTTAAGACAGGATGGTCAGACGTTCAAGCTCATCCTCAGCTGTGCAGCAAGTTCCAGACTCACCCGGGATGCGGGAGACCCTGTTTAAGAAAATGAACTGTCAATACTGCTGTTGGCCTGATTGTTCTCAGAAAATGAAGCAGTGATGAATGGTGTTGAGTTCTCGCGTATGTGTTTTATGAAAGTGACGAAATGGTTTTACATTTAG
Seq C2 exon
CCAGTCAGTCTGCAGGAAGCCAAACTACTTCTAAAAGAAGATGATGAGTTAATTAGAGAAGTTTATGAATACTGGATTAAAAAGAGGAAAACCTGCCGGGGGCCATCACTTATCCCGTCGGTAAAACAGGAAAAACGAGATGGTTCTAGCACAAATGATCCTTATGTGGCTTTTAGAAGACGAACTGAGAAAATGCAAACTCGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014834:ENSRNOT00000019968:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.522
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(44.4=89.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGGACGCTGAGCAG
R:
CGAGTTTGCATTTTCTCAGTTCGT
Band lengths:
344-1155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]