DreINT0063544 @ danRer10
Intron Retention
Gene
ENSDARG00000101579 | epc1a
Description
enhancer of polycomb homolog 1 (Drosophila) a [Source:ZFIN;Acc:ZDB-GENE-070629-5]
Coordinates
chr12:40953403-40955568:+
Coord C1 exon
chr12:40953403-40953548
Coord A exon
chr12:40953549-40955361
Coord C2 exon
chr12:40955362-40955568
Length
1813 bp
Sequences
Splice sites
5' ss Seq
CAGGTTATT
5' ss Score
3.49
3' ss Seq
CATTTCTTTCTGTGCCACAGCTG
3' ss Score
8.54
Exon sequences
Seq C1 exon
CTTTCAGTCTGGATACGGAGCAGCCGGACTACGATCTAGACTTGGAGGATGAGGTTTTTGTAAATAAGCTGAAAAAGAAGCTGGAGGTGGAGGCTCTGCAGTTCGAGGAGATGATTGACAGATTGGAGAAAGGCAGCGGACAGCAG
Seq A exon
GTTATTAAAAAGATTCACCACTTACAATGTGAACTGCAGAGGAAAAAAAACTTAGGGATTTCAGCCAGTGATACTAGTGGAACTTTAAATTGAAAGCTAAAGTGAATCTGCTGAACATTTCCGTCTGAGTTCGGTGAAATCCAGCAAACCTGACATTTATTAAAGGGATAGTTCCCCCAAAAATGAAAGTTCACTAACCATTTACATAACTTGTTATAGACCTTTGGTTATTCTGTTGAACAAAAGAGGAAGTATATTAAAGAATGATGCAAATTTGTAATAATTGTCTTCCATAGTACCTGTTTTCCTTACTATGGATGTCAGTGGCTCCCAATTTACAGGATATCTTTTGTGGTGAGCAGAAAACAAATTAGCTTAAAGGTTTGAATGAATGGTGGGTAAATATTTCTGTTTTAGGTGAAATATTCCTGCAAGTTAAAATTGGAGACTGACTGATGCAAATAAATAGGAAAGAAAGTGTTTTAATAAAATGTTTTTTGCCTTAAAAACTCTTAGGGTTGTTCCAATACTAGTATTGGAAATCCTAATTGAAACTGCAAAAATTCTGGCATTGGCAAGTATTTAAAACCATAAACCAATCCGATATCATCATTTTAAATGAGACATATGACCGCAAGCTTTGCTTAACACTGCAAACCTGGAATCAGTTCCTCTGCCACAACATCCACTCTTATAGCAGTGCAGTGTAACGCATATTTTTATTTAAAAAATGTTTCAAAATTTTACGTTTTCAATGCTGTGATTTATTTATTTTTTTCTCTGTTAATCATATTCATTTTTTTTTTATTTCTTATTTTTTGTACTGATTTATATACAGTTGTACTGAAACTCAGATATTTTTTTTTTCAGTTTATGGTGTTTGATTTGTGGCCTAAGGCTGGTTTACACTGCTGTGTTGAGTGATCGGCGTGACCCATGGCGCCTTCAATGTAGTTGTAGTATTACATTTATAGTTGAAGTAGTTGGGCGTTTATACTTCTGCGTGCTATTTGTGTAGCTCTGCAATAACACTTCTGAAACGCTAGCTGGCAGTAGGTTTTTGTTCCTCTTTCTTAAATTTCTTTGCGGGTGTTTTGTTTTTTCTGAACGCTATCTTAATGTACAAGTAGCTCACGCAGCTCTCAGCACCGCCCACGCTCGTCACTGGTACTAAGCCAACCAATTACAGAGCTTGCGCTACGCGTCCTTGGGATGTGTAGTTACATTTTTTAAAATGCGCGTCAGCCACAACGAGGGCTATGCAACCACGCGAAGGCTGCTCCAGACCATACATGTGTAAATCAGCCTTTATTCCTAAGTACAGTTAACTTATTTCAATAAAGTACAGATAAAGGCATTGTGCCGAAACGTTTGTGTCTTTAAATAACCCGAAGAATGTATGAAGAAAAACTAAAAACAGTACGAAGCAATTACTTAATGAGTGCGAATCATTACCTTTTTGAATAAAGTACTGTTATATTAACGTTCAATGTCTGATAAATAAAATGGTAGATAATATAAATACTCGCTCAATAATTCTTTGTATACATTTGTTCATGTTTTATTAATGAATAAGTCTGAATTTCACCGTAAATTAATTCTGAATTTATACAGGGCTAGTAGTATACACAACTGTTTCTATGTATACACACTAAGGTATTGGTTCGGTACTCCATATCGGCCGATACACTGAGCTTAGGTATTAGAATCTGTATTGGGAAAAGAAAAAAAGTGGAATTTCCCCAAATAATTCCTTACTTTTTACTTTTTTTAAATGTTATCTATTAATTTATCATTTCTTTCTGTGCCACAG
Seq C2 exon
CTGGTGACCCTTCAGGAAGCAAAGCTTTTACTGAAGGAGGATGACGAGCTGATCCGGGAGGTGTTTGAGTATTGGAGCAGGAAGAGGAAACTGTCAAAATACGGATCCCTCATCCCAAATATTAGGCAGGAAAAGCGGGATGGATCCAGCACAAATGATCCCTACGTGGCCTTCAGGCGCAGGACGGAGAAGATGCAGACGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101579:ENSDART00000158811:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.377
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(30.6=89.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTACGATCTAGACTTGGAGGA
R:
TTCTCGTCTGCATCTTCTCCG
Band lengths:
326-2139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]