BtaINT0056830 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001552 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr13:33501239-33502031:+
Coord C1 exon
chr13:33501239-33501384
Coord A exon
chr13:33501385-33501824
Coord C2 exon
chr13:33501825-33502031
Length
440 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CATAATGATTTTACATTTAGCCA
3' ss Score
3.36
Exon sequences
Seq C1 exon
CTTTTAGTTTGGATGCTGAGCAGCCCGATTATGATTTGGATTCTGAAGATGAAGTATTTGTGAATAAACTGAAGAAGAAAATGGACATCTGCCCATTGCAGTTTGAGGAGATGATTGACCGTCTAGAAAAAGGCAGTGGTCAGCAG
Seq A exon
GTACAGCTTCATTGTATATATAATGAATGAGTGTATATATATATATATATATATATATATACATATATACATATAAAAGTATCTCTTTGTGTGAAAACAGTGTAAAGTTGGAAAGAGGGTAAGTGAGCAGGCTCTGGACAAGCTTGTATTCATATCTCTGTCCATTTCTAGCCTATATAACCTTCAGCAGAAGGTCTAAATTTCTATGTGTGCCTGTTTCCCAGTGTGTAAAATAAAGATGAAAAACATTACAGGATTGTTGTGAAAATTAAATACAATAATTTACATAAAGCGTCTAGCTTGTTATCTGACATGTACAAGGTACTCAGCATATTTGCTATTGTTAATACTATTATTCTGATGATTGTCATTTAAATTAGAAGTACTTTTGAACCTTTTCTTTGTATTATATGAAAATGACATAATGATTTTACATTTAG
Seq C2 exon
CCAGTCAGTCTGCAGGAAGCCAAACTACTGCTAAAAGAAGACGATGAATTAATTAGAGAAGTTTATGAGTACTGGATTAAAAAGAGAAAAAACTGTCGAGGTCCGTCTCTTATCCCATCAGTAAAACAAGAGAAGCGAGATGGTTCGAGCACAAATGATCCTTACGTGGCTTTTAGAAGACGTACTGAAAAAATGCAGACGCGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001552:ENSBTAT00000002038:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.522
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(30.6=89.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTAGTTTGGATGCTGAGCAG
R:
TCAGTACGTCTTCTAAAAGCCACG
Band lengths:
334-774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development