HsaINT0056887 @ hg19
Intron Retention
Gene
ENSG00000120616 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:19876]
Coordinates
chr10:32581916-32582665:-
Coord C1 exon
chr10:32582520-32582665
Coord A exon
chr10:32582123-32582519
Coord C2 exon
chr10:32581916-32582122
Length
397 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
CATAATGGTTTTACATTTAGCCA
3' ss Score
4.03
Exon sequences
Seq C1 exon
CTTTTAGTTTGGATGCTGAACAGCCTGATTATGATTTGGATTCTGAAGATGAAGTATTTGTGAATAAACTGAAAAAGAAAATGGACATCTGCCCATTGCAATTTGAGGAGATGATTGACCGCCTAGAAAAAGGCAGTGGTCAGCAG
Seq A exon
GTACAACTTCATTTGTATATAACAAGTATATACATATTCTATGTAAAGAACTGTATTGTATGGAAAGAGTGTGAGATTGCAGGTTGGGGGTAATCAGTCAGGCTTTAGAGTTAAAAAGTATGAATTCAAATCTCATCTCTGCTTATCAGTAACCTGTGTAATCTTGAGCAATATGTTTAAATTTTTCTGTGCCTTGGTTGCCCTGGGATTGTCGTAAAGATGAAATAATGTATATAAAGCACCCTAGTTCAGTGACTGACAGGCATAATGTACTCCTCAAGTTTCCCATTTGTTAATAATGTTGTAATATTGATTATTGTCCTTTAAATTTAGAAGTAAATACTTATGAACCTTGTATGTGTATTGTATGAAAATGACATAATGGTTTTACATTTAG
Seq C2 exon
CCAGTCAGTCTGCAGGAAGCCAAACTACTGCTAAAAGAAGATGATGAACTAATTAGAGAAGTTTATGAATATTGGATTAAAAAGAGAAAAAACTGTCGAGGGCCATCTCTTATTCCATCAGTAAAACAAGAGAAGCGAGATGGTTCCAGCACAAATGATCCTTATGTGGCTTTTAGAAGGCGTACTGAAAAAATGCAGACTCGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120616-EPC1:NM_025209:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.536
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(30.6=89.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAGCCTGATTATGATTTGGA
R:
TCAGTACGCCTTCTAAAAGCCAC
Band lengths:
318-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)