MmuINT0058035 @ mm10
Intron Retention
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6454187-6455334:-
Coord C1 exon
chr18:6455189-6455334
Coord A exon
chr18:6454394-6455188
Coord C2 exon
chr18:6454187-6454393
Length
795 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
CGAAATGATTTTACATTTAGCCA
3' ss Score
2.07
Exon sequences
Seq C1 exon
CTTTTAGCTTGGACGCTGAACAGCCTGATTACGATCTGGATTCTGAAGATGAAGTATTTGTGAATAAACTGAAGAAGAAAATGGACATCTGCCCATTGCAGTTTGAGGAGATGATTGACCGGCTAGAAAAAGGCAGCGGTCAGCAG
Seq A exon
GTACAACTTCATGTCTTTATGTCTATGTGTTACCTATAAACTCCTGTATTATGTGGAACAGTGCTGTATGGAGGAGAGCTGAGCCAGCACACTCTGCAATTAGAAGCATAGATTCACATCTGCCTATTATTAACCTGTATAATCTTGAGCATTATGTTTAAATTTTTTGTGCCTCACTTACCCCAGCTATATATAGAAATAAAAATAATAAACTGGAGGGATATGGTGTCACACACCTTTAATCCCAGCATTTGGAAGGTAGAGGCAGATGGATGGATCTCTGAGTTAAAGACCAGCCTGCTCTACATTGTAAGTTCCAAGCCAGCCAAGGGCTACATAGTAAGACCCTATCTCTAAACAAAAAGAATCAAGAAATCTCTTCACCTGGCATTTGTGTATTTGGTGAAAAAGTAGAAAGTGACTGATACCAAGTCCTAAAGTCATGAAACACAGCAAGTTGTGTGAAATTGGTTTGGGATTATTGTAAAGACTGCACACTCGGGCTAGAGATGTAGCTCAGTTAAGCACAGTGCCTGCCTAGCATGTGTTGGGTGTGCTCCCCAACACCCAGTGAAATCAAGTGTAGTGTTTGCACCAGTCCAAGCCCTGGTACTTAGAAGTACAGGGTCATCTTCAGCTATGCAGCAGGTTCAGGACTAACCTGGGATGCATGAGGCCCTGTTTAAGGAAGTATACTGTCAATCTTGATTGTGTTCATTAAAGGAAGCCGTGATGAATGTTTTTGAGTCCTTGCATATGTGTTTTATGAAAGTGACGAAATGATTTTACATTTAG
Seq C2 exon
CCAGTCAGTCTGCAGGAAGCCAAACTACTTCTAAAAGAAGATGATGAGTTAATTAGAGAAGTTTATGAATACTGGATTAAAAAGAGGAAAACCTGCCGGGGGTCATCACTTATCCCGTTGGTAAAACAGGAAAAGCGAGATGGTTCTAGCACAAATGATCCTTACGTGGCTTTTAGAAGACGAACTGAGAAAATGCAAACTCGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240:ENSMUST00000115870:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.362
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(30.6=89.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAGCTTGGACGCTGAACAG
R:
CCGAGTTTGCATTTTCTCAGTTCG
Band lengths:
348-1143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types