GgaINT0101654 @ galGal3
Intron Retention
Gene
ENSGALG00000007169 | EPC1
Description
NA
Coordinates
chr2:14064758-14065195:+
Coord C1 exon
chr2:14064758-14064903
Coord A exon
chr2:14064904-14064988
Coord C2 exon
chr2:14064989-14065195
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
ATACTGGATTTTACATTTAGCCA
3' ss Score
2.8
Exon sequences
Seq C1 exon
CTTTTAGTTTGGACGCTGAGCAGCCAGATTATGACATGGATTCAGAAGATGAGGTCTTTGTCAATAAGTTGAAGAAAAGAATGGATATCTCTCCTTTACAATTTGAAGAGATGATAGACCGACTAGAAAAGGGCAGCGGTCAGCAG
Seq A exon
GTATGGTGTTGCTTTCAGTAAAGAATTTGAAATGTGCATTGTCTGTAATGCCATATGACAATGACATACTGGATTTTACATTTAG
Seq C2 exon
CCAGTCAGCCTGCAAGAGGCCAAGCTGCTGCTGAAAGAAGATGATGAATTGATCAGAGAAGTATATGAGTACTGGATTAAAAAGAGGAAAAACTGTCGAGGGCCCTCTCTTATCCCAGCAGTGAAACAAGAGAAGCGAGATGGCTCCAGCACAAATGATCCTTACGTTGCTTTTAGGAGACGAACAGAAAAGATGCAGACGAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169:ENSGALT00000011610:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.388 A=NA C2=0.507
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(30.6=89.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTAGAAAAGGGCAGCGGTC
R:
ATTTGTGCTGGAGCCATCTCG
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]