BtaALTD0009528-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95909821-95911037:-
Coord C1 exon
chr11:95910988-95911037
Coord A exon
NA
Coord C2 exon
chr11:95909821-95910119
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCTTTCATCTGATTTATAGATA
3' ss Score
7.18
Exon sequences
Seq C1 exon
GACAGAAAGCTTTGACCTCCAAGCTGTTTTAAATCTAATAGATAAGCCAG
Seq A exon
NA
Seq C2 exon
ATACTCCTGTGCCACAGACCTTTGGCCTTCATTTCAGTGGGAATGCAGCTAGTTTGGATAACTGGGCCTTTTTAGGCACCTGTCTCGGAATTCCTGGTTGCTGGCCTAACAATTGTTGTAGCGGTCAAGCACTGGTCATCAGTGTAGGAGAGCCACACAGCAAAATGTTTGCAAAACTGAAGAAGAAAATTGCAGAAGAGACTGCTGTCGCTCAGAGGCCAGGAGGTGCTACTAGGATCCCACGATCAGTGAGCAAAGAGTCCGTTGCCTCCATGGGAGCTGACTCAGGAGATGACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286-2-4,3-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.733
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTGACCTCCAAGCTGTT
R:
CAGTGCTTGACCGCTACAACA
Band lengths:
177-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development