BtaINT0067835 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95909821-95911037:-
Coord C1 exon
chr11:95910988-95911037
Coord A exon
chr11:95910120-95910987
Coord C2 exon
chr11:95909821-95910119
Length
868 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCTTTCATCTGATTTATAGATA
3' ss Score
7.18
Exon sequences
Seq C1 exon
GACAGAAAGCTTTGACCTCCAAGCTGTTTTAAATCTAATAGATAAGCCAG
Seq A exon
GTGAGTAGGTGGTTTACAGACACTGAAGGCAAACTTTTGAAGAATTGCACAGACTTAAATGGATGCTCAGAAGTGGTAAGCAGTCATTTGTAGATCTTAGAGCTTCCTCATTAGAGGTCTTAGAGCAGAGCTTAGATATCCGCCAGAAAACATCAGAAGTTAAGATTGGAACCAGAATGTTAATGTTTCATGCATGATGGGAGGAAGAGATGTTTGAATCTGGTGTGTAGTATCATGGAACACATTGTACAAAAAAAGAAACTAACGAGGTAATTTTAATCACTCTTTAAGAAAACCACACAGCATTTCCAGGAAACATTTAAGGATGTTTCCTGATACAGTGCAGTTGGCTGGCTTTCCTGTTTTTTTTAGAAAAAAGTTGTCAACATTTTCTAGTGAACAGCTGATTCCACACCATCTTGGAACATCAGAACATTACATCTTTTCCCTGTATTGAGTTACATGTTTTTGTCTAAACTGTAGTCATACTTAATATTATTAGGGGAAGAATTCAAAAACATTATGTTAATGTTTCCCCTGGGAAATTTTGCTTAATGTGTTGTATGCCACAGCCAATGTGATGTAATTTAAAAAAAGAGTAAAGACTTGTGGGTTCCTGGGTTCCAAAGCACTGCACTTTAGCCACACAATCTTTGGCATATTACTTCACCTCCCTAAAACTGGATTTTCTTATCTGTATATGCATCTGTCACACCTGAGTGCTTTGTAAATGTTTAGTAATTGTGTCCTAGTAAGTGTGCATGTAAAATTATGAAACTTAATTTTGAAACCTAAAGCTTAACAAAGCAACCCAGATAGGAAATTTCTCTGATGTTTAATTTAGAGCTCTCTTTCATCTGATTTATAG
Seq C2 exon
ATACTCCTGTGCCACAGACCTTTGGCCTTCATTTCAGTGGGAATGCAGCTAGTTTGGATAACTGGGCCTTTTTAGGCACCTGTCTCGGAATTCCTGGTTGCTGGCCTAACAATTGTTGTAGCGGTCAAGCACTGGTCATCAGTGTAGGAGAGCCACACAGCAAAATGTTTGCAAAACTGAAGAAGAAAATTGCAGAAGAGACTGCTGTCGCTCAGAGGCCAGGAGGTGCTACTAGGATCCCACGATCAGTGAGCAAAGAGTCCGTTGCCTCCATGGGAGCTGACTCAGGAGATGACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286:ENSBTAT00000020327:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.733
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAAGCTTTGACCTCCAAGC
R:
CATCTCCTGAGTCAGCTCCCA
Band lengths:
342-1210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development