RnoINT0066240 @ rn6
Intron Retention
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23351438-23352654:-
Coord C1 exon
chr3:23352606-23352654
Coord A exon
chr3:23351721-23352605
Coord C2 exon
chr3:23351438-23351720
Length
885 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCTTTCATCTGATTTATAGATC
3' ss Score
7.69
Exon sequences
Seq C1 exon
GGCAGTGACTTTGACCTCCAGACTGTCTTAAACATAGTAGATAAGACAG
Seq A exon
GTGAGTACAGTGGTTTACAGATACTGGGGTAGCATTTTGAAGGGTTTCATAGACCTAATGGATAATCTGAAGTGGTAAGGAGTCATCTGTCATCTTACAGCAGACCGTATCCTTCACAAGACGTGGAAAGTTAAGGTTGAAACAGAACAGTAAGAGTTTGCTTTATTTTGTTTTTGAGACAAGATCTCACTATGCAGCCCTCCCTGGCTGACCTGGAGCTGTGTAGACCACTTGAACTCACAAAGATCCTTTTGCCTCTGCACCACCACATCTGGCCCAGTAATGTTTTATATACCATTGAAGGAAAGAAATTTTGAATCTTATGTTAAATGTCATATGGGAAGAAATTGGGGCTTGAGGTAATACTATCAAGAACAAAGAAAAGTATACATTTCCACACATGTGTGAAAAGTTGAAGGGTTTCTGATGACTAGTTAGTCTGGGTTCCTTGGTGGTTTTTTTCTGTTGTAACTTTTCCTCCCTCTAGGATGAAGCACCTGATTGAAACCCAGGGATTGAGTTGTATATACACTAAATTCTTAGTAAATATATTATTAGAAGAAAGAGTCAAAACATAAAGTCATGATTACATGGTGTTGACCTGGAAAATGTTACATGTTACACCATAGCTAAAACAAAAGGTTGGGGTTTATGAGTCAGCTCTGTGTTTAGACATTAGCCCTAGATGCTTAGCCATGTAGTCCTTGGCAGGTTGTTATGCGTCTTTCAGACCAGATGTCCTTATTCATATATGTAAGTCAAGCACCTGAGTGTTTTTTAAAGTTTAATAATTATGATCTAATATATACTTACTATGAAACTACTTTTGAAACCTCAGACTGACAGCTATTTAACTTGGAACTATCTCTTTCATCTGATTTATAG
Seq C2 exon
ATCCTGTGTTGCCAAAATTCTTTGGCCCACATTTAAGTGGGATGCAGCTAGCCTGGAGGTGTGGAACCTTTTAGGTACCTGTGTATGAATTCCATTCACTGAGAAGTCCAGGGGTTAGTTTCCCCTGAAAGATATCCACACAGCAAACATGTTTGCAAAACTAAAGAAGAAAATTGCAGAGGAGACTGCTGTTGCTCAGAGGCCAGGCTGCACTCCTAGGATCCCTCGGTCTGTGAGCAAGGAGTCTGTGGCTTCCATGGGGGCTGACTCAGGAGATGATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493:ENSRNOT00000019703:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.733
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTGACTTTGACCTCCAG
R:
ATCATCTCCTGAGTCAGCCCC
Band lengths:
329-1214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]