BtaALTD0009619-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000004204 | GPR107
Description
Bos taurus G protein-coupled receptor 107 (GPR107), mRNA. [Source:RefSeq mRNA;Acc:NM_001099164]
Coordinates
chr11:100443612-100444103:+
Coord C1 exon
chr11:100443612-100443734
Coord A exon
NA
Coord C2 exon
chr11:100444053-100444103
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CCGTTTTCACCTCCTCTTAGATT
3' ss Score
9.36
Exon sequences
Seq C1 exon
GATGACGTGAGGCATAAGGTTCATCTGAACACCTTTGGATTCTTCAAGAATGGGTACATGAAGGTGAATGTCAGCAGCCTTTCAGTGAATGAACCTAAAGGAGCCACAGACAAGGACTTCACT
Seq A exon
NA
Seq C2 exon
ATTGGATTCAGCCTAGACCGAACAAAGAACGATGGCTTTTCTTCGTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004204-2-5,3-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGAGGCATAAGGTTCATCTG
R:
TGTTCGGTCTAGGCTGAATCCA
Band lengths:
143-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development