MmuALTD0006208-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31167021-31168214:+
Coord C1 exon
chr2:31167021-31167141
Coord A exon
chr2:31167142-31167143
Coord C2 exon
chr2:31168162-31168214
Length
2 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
GTCCTCTCTTTGCTGCCCTCAGA
3' ss Score
-10.48
Exon sequences
Seq C1 exon
GATGATGTGCGGCATAAAGTCCATCTCAACACCTTCGGGTTCTTCAAGGATGGGTACATGGTGGTCAACGTCAGCAGCCTCTCTGTGAACGAGCCTGAGGGAGCCACGGACAAGGATGCTG
Seq A exon
AG
Seq C2 exon
AGATCGGATTCAGTCTGGATCGGACTAAGAACGATGGCTTTTCTTCTTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194-12-2,13-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTACATGGTGGTCAACGTC
R:
TCCGATCCAGACTGAATCCGA
Band lengths:
94-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types