BtaALTD0010269-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000014898 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr7:39694287-39696535:-
Coord C1 exon
chr7:39696452-39696535
Coord A exon
chr7:39696436-39696451
Coord C2 exon
chr7:39694287-39694470
Length
16 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
CCCATCTGGCTCCTCTGCAGGAA
3' ss Score
8.97
Exon sequences
Seq C1 exon
GCAGTGGAGCTGAATGTGGTTGCCATTGTCAATGACACGGTGGGGACCATGATGTCCTGTGGCTACGAGGACCCCCATTGCGAG
Seq A exon
GTCGGCCTCATCGTCG
Seq C2 exon
GAACAGGAACCAATGTCTGCTACATGGAGGAGCTCCGGAATGTGGCAAGTGTGGATGGGGACTCAGGCCAGATGTGCATCAACACGGAGTGGGGCGCCTTTGGGGATGACGGCTCTCTCAGCATGCTCAGCACCCGTTTTGATGCCAGTGTGGACCAGGCATCCATCAATCCCGGCAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014898-16-16,17-16,18-16-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.5=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGATGTCCTGTGGCTACG
R:
GATGCACATCTGGCCTGAGTC
Band lengths:
118-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development