GgaALTD1011349-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000027287 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr13:9651671-9652060:+
Coord C1 exon
chr13:9651671-9651766
Coord A exon
chr13:9651767-9651770
Coord C2 exon
chr13:9651877-9652060
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
ACACCAGCGCTGGGCTGCAGGGA
3' ss Score
1.14
Exon sequences
Seq C1 exon
CACACAACGCTGAAGGTGGTGGCTGTGGTGAACGACACCGTGGGGACCATGATGGCCTGTGGCTACCATGACCCCAAGTGTGAAATTGGCCTCATT
Seq A exon
GTGG
Seq C2 exon
GGACGGGGACCAACGCCTGCTACATGGAGGAGAGGGCAAACGTGGGCACCGTGGAGGGAGACGAGGGCCGCATGTGCATCAACATGGAGTGGGGTGCTTTTGGGGACAACGGCTGCCTGGACGGCTTCTTCACCAGCTTTGACCAGCTGGTGGATGAGAAAACCATCAACGCGGGCAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027287-18-21,19-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.3=67.6),PF0372711=Hexokinase_2=PU(3.2=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(24.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCATGACCCCAAGTGTG
R:
CTCGTCTCCCTCCACGGTG
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]