BtaALTD0011095-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000012897 | ITGA7
Description
integrin, alpha 7 [Source:HGNC Symbol;Acc:HGNC:6143]
Coordinates
chr5:57887255-57888646:+
Coord C1 exon
chr5:57887255-57887370
Coord A exon
NA
Coord C2 exon
chr5:57888454-57888646
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGG
5' ss Score
5.25
3' ss Seq
ACTGGGATCTGATCCTGCAGGGA
3' ss Score
7.51
Exon sequences
Seq C1 exon
ATCCACTTCCTGAAGCAAGGCTGTGGTGAAGACAAGATCTGCCAGAGCAATCTGCAGCTGGTCCAAGCCCGGTTCTGCGCCCGCGTCAGTGACACGGAGTTTCAGCCTCTGCCCAT
Seq A exon
NA
Seq C2 exon
GGATGCAGATGGGACGACAGCCTTGTTTGCTCTGAGTGGGCAGCCAGTCATCGGCCTGGAGCTGAAGGTCACCAATCTACCCTCGGATCCAGCCCAGCCCCAGGCTGATGGGGATGATGCTCATGAAGCCCAGCTCCTGGTCACCCTCCCTGCTGCTCTGCACTACTCCGGAGTCCGGGGCCTGGACCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012897-36-35,37-35-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.277
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(8.4=100)
A:
NA
C2:
PF084417=Integrin_alpha2=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGGAGTTTCAGCCTCTG
R:
CCGAGGGTAGATTGGTGACCT
Band lengths:
112-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development