MmuALTD0007198-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000025348 | Itga7
Description
integrin alpha 7 [Source:MGI Symbol;Acc:MGI:102700]
Coordinates
chr10:128946563-128946991:+
Coord C1 exon
chr10:128946563-128946625
Coord A exon
NA
Coord C2 exon
chr10:128946799-128946991
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
AGTTGGGTTCCGTCTTCCAGGGA
3' ss Score
7.85
Exon sequences
Seq C1 exon
GGCTGGCTGGCTCGGTGTTAAGAACTGGGAGCAGAGGCCCAGAGATCTTGCTGTTTACACAAG
Seq A exon
NA
Seq C2 exon
GGATCTGGATGGAAGGACCGCCCTGTTCGCATTGAGTGGGCAGCCGTTCATAGGCCTGGAACTGACAGTCACCAACCTGCCCTCTGACCCTGCCCGGCCTCAGGCAGATGGGGATGATGCTCATGAAGCACAGCTCTTGGTCACTCTCCCAGCCTCTCTACGGTACTCAGGAGTCCGTGCTCTGGACTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025348-26-25,27-25-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.231
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF084417=Integrin_alpha2=FE(13.0=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGAGGCCCAGAGATCTT
R:
GCAGGTTGGTGACTGTCAGTT
Band lengths:
115-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types