BtaALTD0011390-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93667029-93667274:-
Coord C1 exon
chr4:93667212-93667274
Coord A exon
chr4:93667192-93667211
Coord C2 exon
chr4:93667029-93667122
Length
20 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
TGAGCCTGCCTCTCCCACAGGCT
3' ss Score
9.35
Exon sequences
Seq C1 exon
GCTGCCTCTCTCAGGGCCAGGAGCACCAGGACGGGGAGGAGTTCGAGGGGCCCACAGGCAGCT
Seq A exon
GTGAGCGCTGTCTCTGTCAG
Seq C2 exon
GCTGGCCAGGTCAGCTGTGTGCGGCAGCGCTGCCCACCCCTGTCCTGCCCGCTCCAGGTCACGGAGCCGGGGAGCTGCTGTCCTCGCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449-35-38,36-38-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(45.6=92.9)
A:
NA
C2:
PF0009313=VWC=PD(50.9=90.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCTCAGGGCCAGGAG
R:
CAGGACAGGGGTGGGCAG
Band lengths:
106-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development