BtaEX0018909 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93664858-93667274:-
Coord C1 exon
chr4:93667192-93667274
Coord A exon
chr4:93667029-93667122
Coord C2 exon
chr4:93664858-93665031
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGAGCCTGCCTCTCCCACAGGCT
3' ss Score
9.35
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCTGCCTCTCTCAGGGCCAGGAGCACCAGGACGGGGAGGAGTTCGAGGGGCCCACAGGCAGCTGTGAGCGCTGTCTCTGTCAG
Seq A exon
GCTGGCCAGGTCAGCTGTGTGCGGCAGCGCTGCCCACCCCTGTCCTGCCCGCTCCAGGTCACGGAGCCGGGGAGCTGCTGTCCTCGCTGCAGAG
Seq C2 exon
GCTGCCTGTTTCATGGGGAGGAGCACCCCGAAGGCAGTAGCTGGAAGCCCCCTGACAGCCCCTGCTCCTCCTGCATGTGTCATGAGGGTGTCATCACCTGTGCCCGCATCCAGTGTGTCACCTCCTGTGCCCAGCCCCACCAGGGGCCCAGTGACTGCTGCCCTCGGTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449_MULTIEX1-12/25=11-13
Average complexity
S
Mappability confidence:
94%=94=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(45.6=92.9)
A:
PF0009313=VWC=PD(50.9=90.6)
C2:
PF0009313=VWC=WD(100=94.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCTCAGGGCCAGGAG
R:
CCCTCATGACACATGCAGGAG
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development