BtaALTD0011546-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000012809 | KIAA1045
Description
KIAA1045 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chr8:59669819-59671030:+
Coord C1 exon
chr8:59669819-59669934
Coord A exon
NA
Coord C2 exon
chr8:59670845-59671030
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGCTGCCATCTTTCCCCAGGTT
3' ss Score
11.29
Exon sequences
Seq C1 exon
AGCCATGGGGGTGTTGATGTCCAAGCGGCAGACGGTAGAACAGGTGCAGAAGGTGAGCCTGGCTGTGTCTGCCTTCAAGGATGGGCTGCGGGACAGGCCTTCCATCCGACGCACAG
Seq A exon
NA
Seq C2 exon
GTTGTTAATGATGAGATGTGTGATGTCTGTGAAGTCTGGACGGCCGAAAGTCTCTTCCCGTGCAGGGTCTGCACCAGGGTTTTCCATGATGGCTGCCTACGCCGCATGGGCTACATCCAGGGAGACAGTGCCGCAGAAGTGACCGAAACGGCCCACACGGAAACAGGCTGGAGCTGCCACTACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012809-3-2,4-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=WD(100=69.4),PF0062824=PHD=PU(93.3=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGGGGGTGTTGATGTC
R:
GCAGCTCCAGCCTGTTTCC
Band lengths:
292-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development