BtaALTD0011546-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000012809 | KIAA1045
Description
KIAA1045 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chr8:59669819-59671030:+
Coord C1 exon
chr8:59669819-59669934
Coord A exon
chr8:59669935-59670200
Coord C2 exon
chr8:59670845-59671030
Length
266 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CTGCTGCCATCTTTCCCCAGGTT
3' ss Score
11.29
Exon sequences
Seq C1 exon
AGCCATGGGGGTGTTGATGTCCAAGCGGCAGACGGTAGAACAGGTGCAGAAGGTGAGCCTGGCTGTGTCTGCCTTCAAGGATGGGCTGCGGGACAGGCCTTCCATCCGACGCACAG
Seq A exon
GTGAGCTTCCAGGGTCTCGCCGTGGCACAGTAGAGGGCTCTGTCCAAGAGGTGCAGGAGGAGAAAGAAGCAGAGGCAAGTGCCCCAGCACTCCAAGAAGAGAGCAGTGTCAACCGTGCCTCCTGGGAGAGGCTCCGGGATGGGCGTGGAGTGGAGCCTGAGGAGTTTGACAGGACCAGTCATTTTACACCCCCTGCCTTCATCCGCCCCACCCGGAAGCTGGATGACGACAAGCCTCCAGATATCCGCTTGGAGCCCAGAGAGCCT
Seq C2 exon
GTTGTTAATGATGAGATGTGTGATGTCTGTGAAGTCTGGACGGCCGAAAGTCTCTTCCCGTGCAGGGTCTGCACCAGGGTTTTCCATGATGGCTGCCTACGCCGCATGGGCTACATCCAGGGAGACAGTGCCGCAGAAGTGACCGAAACGGCCCACACGGAAACAGGCTGGAGCTGCCACTACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012809-3-2,4-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=WD(100=69.4),PF0062824=PHD=PU(93.3=90.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGGGGGTGTTGATGTC
R:
GCAGCTCCAGCCTGTTTCC
Band lengths:
292-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development