HsaALTD1016136-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000122733 | PHF24
Description
PHD finger protein 24 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chr9:34971295-34972531:+
Coord C1 exon
chr9:34971295-34971346
Coord A exon
chr9:34971347-34971676
Coord C2 exon
chr9:34972346-34972531
Length
330 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CTCCTGCCATCTTTCTGCAGGTT
3' ss Score
11.72
Exon sequences
Seq C1 exon
AGCCATGGGGGTGTTGATGTCCAAGCGGCAGACAGTGGAGCAGGTGCAGAAG
Seq A exon
GTGAGTCTGGCTGTGTCTGCTTTCAAGGATGGGCTGCGGGACAGGCCTTCCATCCGACGCACAGGTGAGCTGCCAGGGTCCCGCCGTGGCACTGTAGAGGGCTCCGTCCAGGAGGTACAGGAGGAGAAGGAAGCAGAAGCAGGAACCTCGGTGGTCCAGGAAGAGAGTAGTGCCGGCCGCGCAGCCTGGGAGCGGCTCCGAGATGGGCGCGGCGTGGAGCCTGAGGAGTTTGACAGGACAAGTCGATTCACACCCCCTGCGTTCATCCGCCCCACCCGGAAGCTGGATGATGACAAACCTCCAGAAATCTGCCTGGAGCCCAGAGAGCCT
Seq C2 exon
GTTGTCAACGATGAGATGTGTGATGTTTGTGAGGTCTGGACAGCTGAGAGCCTCTTCCCGTGCAGGGTCTGCACCAGGGTTTTCCATGATGGCTGCCTGCGCCGCATGGGCTACATCCAAGGAGACAGTGCAGCGGAGGTGACGGAGATGGCCCACACAGAAACAGGCTGGAGCTGCCACTACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122733-3-6,5-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.746 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATGGGGGTGTTGATGTC
R:
ACAGTAGTGGCAGCTCCA
Band lengths:
238-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains