GgaALTD1017249-2/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000001900 | PHF24
Description
PHD finger protein 24 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chrZ:8364750-8366067:+
Coord C1 exon
chrZ:8364750-8365003
Coord A exon
chrZ:8365004-8365122
Coord C2 exon
chrZ:8365882-8366067
Length
119 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
3' ss Seq
GCTACAGCATTGCTCCACAGGTC
3' ss Score
4.54
Exon sequences
Seq C1 exon
AGCCATGGGGGTGTTGATGTCAAGACGGCAGACGGTGGAGAAGGTGCAGAAGGTCAGCTTGGCTGTGTCCGCTTTCAAAGATGGGCTGCGGGAGCAGCCAGTGGCACGGAGGCGGGCGGAGGCTGGGGGCACACGCCGGGGGACACTGGAGCAGACAGTGCAAGAGGCAGAGGAGGAGGCATCCGCAGGGCCCTCACAGCCAGAAGAAGTCAGCGCCAGCAAGGCTGCCTGGGAGCGGCTGCGGGATGGCCGAG
Seq A exon
GTGTGGAGCCAGAGGAGTTTGATCGAGCCAGCAGGTTCACACCGCCTGCCTTCATTCGGCCCCAGCGAGAGCTGCATGATGATGAGCCACTGGACATCAGCCTGGAGCAGCGGGAGCAG
Seq C2 exon
GTCCTCAATGATGAGATGTGCGAGATCTGTGAAGTGTGGACAGCCGAGAGCCTCTTCCCCTGTCGCGTCTGCAACCGGGTGTTCCACGATGGCTGCCTGCGCCGCATGGGCTACCTGCAGAATGATAGCGCTGTGGAGGTGACGGAGACTGCACATACCGAGACAGGCTGGAGCTGCTACTACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001900-3-1,4-1,5-1-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.650 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF137711=zf-HC5HC2H=PU(28.0=21.1),PF0013017=C1_1=PU(6.5=2.4)
A:
NA
C2:
PF137711=zf-HC5HC2H=FE(65.6=100),PF0013017=C1_1=PD(89.1=66.1)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAGGTGCAGAAGGTCA
R:
CCACACTTCACAGATCTCGCA
Band lengths:
258-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]