BtaALTD0011678-2/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000002280 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
Coordinates
chr13:33661007-33665129:+
Coord C1 exon
chr13:33661007-33661123
Coord A exon
chr13:33661124-33661133
Coord C2 exon
chr13:33664442-33665129
Length
10 bp
Sequences
Splice sites
5' ss Seq
GGTGTAAGC
5' ss Score
4.48
3' ss Seq
CTGTTTTTTTCCATCTTCAGGTG
3' ss Score
12.83
Exon sequences
Seq C1 exon
CTAAACCTATTCGTCCCGGGCAACATCCAGCAGCTTCTCCAACTCATCCAAGTGCGATTCGTGGAGGAGGTGCATTTGTTCAGAACAGCCAGCCGGTGGCTGTGCGAGGTGGAGGAG
Seq A exon
GCAAGCAGGT
Seq C2 exon
GTGTTAAAAGTAATTGAAGTATGAAGAGGACATAATTCAATGACTGTAGCCTGTATCCCTTGGGAACTCTAGAATTATAACGTTTTTTTAGTGTATAAATTGTACCTGGCCTGTACAGCTGTTTCCTATCCACTCTTCTTGTAAACTCTGCTGCTTCCCAACACAACTAGAGTGCAATTTTGGCGTCTTAGGAGGGAAAAACGACAGTTTATAACTGTGGCCCTATTTATTACACAGTTTGTCTTTCATGTCTTAAATTTAGTCTTCACTGTGCCAAGCTAACTGTATCATATAGGACTGTGCTTTTTGTACTTGTTCGTGTTTATTTTTTAATCTCAGTTTAAGTTACCTAGCTGCTACTGCTTGTTTTTCTTTTCTTATAAAATAATACCTTATTTTAGGGGAAATGGAACTTTTAGATTAAATGTCTTAAATTTTACCACTTACAACACTACATGCCCACAAATTATATCAGGTCAGTACTGTACTTAAAAATCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002280-27-31,28-31,29-31,30-31-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTTCAGAACAGCCAGCCG
R:
TCCCAAGGGATACAGGCTACA
Band lengths:
108-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development