BtaALTD0011678-3/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000002280 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
Coordinates
chr13:33661007-33665129:+
Coord C1 exon
chr13:33661007-33661123
Coord A exon
chr13:33661124-33661157
Coord C2 exon
chr13:33664442-33665129
Length
34 bp
Sequences
Splice sites
5' ss Seq
CGGGTTTGT
5' ss Score
3.45
3' ss Seq
CTGTTTTTTTCCATCTTCAGGTG
3' ss Score
12.83
Exon sequences
Seq C1 exon
CTAAACCTATTCGTCCCGGGCAACATCCAGCAGCTTCTCCAACTCATCCAAGTGCGATTCGTGGAGGAGGTGCATTTGTTCAGAACAGCCAGCCGGTGGCTGTGCGAGGTGGAGGAG
Seq A exon
GCAAGCAGGTGTAAGCTCCCCACGACACCCGCGG
Seq C2 exon
GTGTTAAAAGTAATTGAAGTATGAAGAGGACATAATTCAATGACTGTAGCCTGTATCCCTTGGGAACTCTAGAATTATAACGTTTTTTTAGTGTATAAATTGTACCTGGCCTGTACAGCTGTTTCCTATCCACTCTTCTTGTAAACTCTGCTGCTTCCCAACACAACTAGAGTGCAATTTTGGCGTCTTAGGAGGGAAAAACGACAGTTTATAACTGTGGCCCTATTTATTACACAGTTTGTCTTTCATGTCTTAAATTTAGTCTTCACTGTGCCAAGCTAACTGTATCATATAGGACTGTGCTTTTTGTACTTGTTCGTGTTTATTTTTTAATCTCAGTTTAAGTTACCTAGCTGCTACTGCTTGTTTTTCTTTTCTTATAAAATAATACCTTATTTTAGGGGAAATGGAACTTTTAGATTAAATGTCTTAAATTTTACCACTTACAACACTACATGCCCACAAATTATATCAGGTCAGTACTGTACTTAAAAATCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002280-27-31,28-31,29-31,30-31-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGTGGAGGAGGTGCATTTG
R:
AGTTCCCAAGGGATACAGGCT
Band lengths:
128-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development