BtaALTD0012494-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15803018-15804010:+
Coord C1 exon
chr11:15803018-15803117
Coord A exon
chr11:15803118-15803120
Coord C2 exon
chr11:15803912-15804010
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTAGCCTGT
5' ss Score
-16.01
3' ss Seq
TTCTCTCCCTCCTCATATAGTAG
3' ss Score
6.87
Exon sequences
Seq C1 exon
GAAATACCTTCATTGGATCAAGAGAAAACCAGACTTGAGCCTGGTCAACCCCAGCTCTCTCCAGGCATTTCAACCATTCATCTGCATCCACAGTTTCCAG
Seq A exon
GTA
Seq C2 exon
TAGTGATTGAAAAAACATCACCTCCTATGCCTGTGGAAGTAGCTCCTGAAGCTTCAACATCAAGCGCCAGCCAAGTCATTGCACCTACTCAAGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-44-32,45-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=NA C2=0.735
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTCTCTCCAGGCATTTC
R:
AGGAGCTACTTCCACAGGCAT
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development