BtaALTD0012914-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000010616 | MBD6
Description
methyl-CpG binding domain protein 6 [Source:HGNC Symbol;Acc:HGNC:20445]
Coordinates
chr5:56276506-56277003:-
Coord C1 exon
chr5:56276838-56277003
Coord A exon
chr5:56276834-56276837
Coord C2 exon
chr5:56276506-56276569
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGGGTGGGG
5' ss Score
0.79
3' ss Seq
CATTGCCTCCCTTCTTGAAGCCA
3' ss Score
6.34
Exon sequences
Seq C1 exon
GCGGCTGTCCCTCTGCCTCCCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAGGAGGAAACTGGCCCCATAGCAGCCATACCTGGAGCTGGATCTGACCCTGACTGGGGAGAGCTGAGTGCTGAGCCTTGGGAGCCCCTGCCAGCCACCTGCACCTGTGGACA
Seq A exon
GTGG
Seq C2 exon
CCAGCAGGCTCAGTTTACAAACCTGTGAGCTACTGTTGGCTGCTGCCCTCCTTCCCAATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010616-14-13,15-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACTGGGGAGAGCTGAGTG
R:
CAGCCAACAGTAGCTCACAGG
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development