BtaALTD0013065-1/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000047217 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr7:45049225-45050779:-
Coord C1 exon
chr7:45050679-45050779
Coord A exon
NA
Coord C2 exon
chr7:45049225-45049402
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTGGGC
5' ss Score
5.46
3' ss Seq
GCCTGTCTTCCCTCCTGTAGGAG
3' ss Score
11.35
Exon sequences
Seq C1 exon
CGGGAAGCAGCCGGGCTGCGCGGGAGACTGGTTGGTCCTAGGAAGATGGCGGCGCCGGAGCTGGGGCGTTAGAGCGAATGCAGACGGCAGCCTCCTTCTCG
Seq A exon
NA
Seq C2 exon
GAGCTGGTGACCGTCCTCCCTGTGTGACCTTGGCAATTGGGAGCCATGGACCTGGCTTACATCTGTGAGTGGGAGAAATGGCCCAAGAGCACCCACTGCCCGTCGGGTCCCCTGGCCTGCACCTGGTCCTGCCGCAACCTCATCGCCTTCACCACAGACCTGCGCAGTGATGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047217-0-2,2-2,3-2,4-2-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGACTGGTTGGTCCTAGG
R:
AATTGCCAAGGTCACACAGGG
Band lengths:
118-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development