BtaEX0021849 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047217 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr7:45049225-45050756:-
Coord C1 exon
chr7:45050658-45050756
Coord A exon
chr7:45049756-45049889
Coord C2 exon
chr7:45049225-45049402
Length
134 bp
Sequences
Splice sites
3' ss Seq
GGTGCTCCTTCTCATCGCAGCTT
3' ss Score
7.21
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
GAGACTGGTTGGTCCTAGGAAGATGGCGGCGCCGGAGCTGGGGCGTTAGAGCGAATGCAGACGGCAGCCTCCTTCTCGGTGGGCGTACAGGCTGGTCCA
Seq A exon
CTTTCACTGTCCTCGTCACGGTGCACCTGGACCAGTGCCATCACCTCTACCCCATTCCCCAGCCGTGCCCTCCAGACAGCCAGAGGGGCCTGTGAAACAGAAACAGGCTTCTTGGGGCTCCCATCTCCCTCCAG
Seq C2 exon
GAGCTGGTGACCGTCCTCCCTGTGTGACCTTGGCAATTGGGAGCCATGGACCTGGCTTACATCTGTGAGTGGGAGAAATGGCCCAAGAGCACCCACTGCCCGTCGGGTCCCCTGGCCTGCACCTGGTCCTGCCGCAACCTCATCGCCTTCACCACAGACCTGCGCAGTGATGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047217_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTCCTAGGAAGATGGCG
R:
GTCTGTGGTGAAGGCGATGAG
Band lengths:
251-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development