BtaALTD0013501-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000015962 | MMADHC
Description
Bos taurus methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria (MMADHC), mRNA. [Source:RefSeq mRNA;Acc:NM_001034541]
Coordinates
chr2:46663171-46664675:+
Coord C1 exon
chr2:46663171-46663257
Coord A exon
NA
Coord C2 exon
chr2:46664169-46664675
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
TCATTTTTTATTTCTTCCAGTTT
3' ss Score
9.15
Exon sequences
Seq C1 exon
TTCATCAGCGGTGCTAAGGAAATTTGCTATGCCCTCCGAGCTGAAGGCTATTGGGCTGACTTTATTGACCCATCATCTGGTTTGGCA
Seq A exon
NA
Seq C2 exon
TTTTTTGGACCATATACAAACAACACTCTTTTTGAGACAGATGAACGCTATCGACATTTAGGATTCTCTGTTGATGATCTTGGCTGCTGTAAAGTGATTCGTCACAGTCTCTGGGGTACCCATGTGGTTGTAGGGAGTATCTTCACTAATGCTACACCAGACAGCCATATTATGAAGAAATTAAGTGGAAACTAGCAGTAGGGTCAATTAATTTGATCTTATGCTTGTAACATTTGGGATGATCCACAAGCATTGTCAAAGGCTTCCTACTCTGTTGTAGGTATTTATTTCAACATTATGGATTACAATATTGGCAAGGGTTTATAATTTTTAAATTTCAAATACTCATACTATCATTAAATACATGTTGAGCACATCCACATTGTACAAAATGTGATAATTAACATGTAACCAGGGTATGATCTCATATTGTTACTTCTTCCCTTAATTGGAAAAACCTCACTTTTAATTATACCTCTCCAAAAATAAATCATACATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015962-11-13,12-13-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102294=DUF2246=FE(10.1=100),PF133151=DUF4085=PD(12.6=48.3)
A:
NA
C2:
PF102294=DUF2246=PD(22.5=95.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCATCATCTGGTTTGGCA
R:
GCAGCCAAGATCATCAACAGAGA
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development