GgaALTD1014445-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000012473 | MMADHC
Description
Methylmalonic aciduria and homocystinuria type D homolog, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKP2]
Coordinates
chr7:34421611-34427712:-
Coord C1 exon
chr7:34427629-34427712
Coord A exon
chr7:34427626-34427628
Coord C2 exon
chr7:34421611-34426346
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TTCTCTTCTTTTCCACCTAGTTT
3' ss Score
8.31
Exon sequences
Seq C1 exon
TTCATTAATGGTGCCAAGGAAATCTGCTATGCAATCTGTTCTGAAGGCTATTGGGCTGACTTCATTGATCCTTCCTCAGGACTG
Seq A exon
GCA
Seq C2 exon
TTTTTTGGGCCTTACACAAACAACACTCTGTTTGAAACAGATGAACGCTACCGCCACTTTGGATTCTCTGTTGATGATCTCGGCTGCTGCAAAGTTATTCGTCATAACATCTGGGGTACTCATGTTGTTGTAGGAAGTATTTTCACTAATGCTGAACCTGACAGCCCTATCATGAGAAAACTAAGTGGAAACTAACAGTTGTCAGGGTTTCACAGGTCCACATGACTCTGGCACTCTTTGACCTCGTGATTCTTTGTGAGCATTGTCAGAAAGTACCACACTTGAAATACTCTTAGATAATAAAGTATCTGCTATTTATTTTAGTCTCATGAGTATGCTCATCACGTGACATGGAACGTTATTTGACGCTATTTTAACAGCTACTTGTATGTGCCACATGAATTTTAAGCTGTGAGTTTCCCTCATCTTTGAGTTCGAGCTCAGTTGACTGAATACACAGCTATCTGCATAGCCTCTTGATATTATCAGCTGTTCTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012473-12-12,13-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF102294=DUF2246=FE(10.1=100),PF133151=DUF4085=PD(12.7=48.3)
A:
NA
C2:
PF102294=DUF2246=PD(22.5=95.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTCTGAAGGCTATTGGGC
R:
GGCGGTAGCGTTCATCTGTTT
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]