BtaALTD0013803-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51082804-51083268:+
Coord C1 exon
chr22:51082804-51082922
Coord A exon
NA
Coord C2 exon
chr22:51083100-51083268
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTACAG
5' ss Score
3.82
3' ss Seq
CCGGCCTCGGTCCATCCAAGGGT
3' ss Score
2.99
Exon sequences
Seq C1 exon
GTTTCTGGACAAAAATCTGGACGACAACTATTGCCGGAATCCGGACGGCTCGGAGCGGCCCTGGTGCTATACCACCGACCCGCAGATGGAGAGAGAGTTCTGCGACCTCCCCCGCTGCG
Seq A exon
NA
Seq C2 exon
GGTCCGAGGCACAGCCGAGCCAGGAAGCCACGACGCTCAACTGCTTCCGCGGGAAAGGCGAGGGCTACCGGGGCACAGTCAACACCACCGCCGCAGGCGTGCCCTGCCAGCGTTGGGATGCACAGCTCCCACATCAGCATCGCTTTGCGCCGGAAAAGTATGCGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585-8-6,9-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=NA C2=0.193
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(9.5=9.3)
A:
NA
C2:
PF0005113=Kringle=PU(53.2=73.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATACCACCGACCCGCAGAT
R:
CAGTTGAGCGTCGTGGCTTC
Band lengths:
96-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development