RnoALTD0018803-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116859445-116859908:+
Coord C1 exon
chr8:116859445-116859563
Coord A exon
NA
Coord C2 exon
chr8:116859713-116859908
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTATGC
5' ss Score
7.62
3' ss Seq
CAATTCCAATTTTTGGGCAGGGC
3' ss Score
4.25
Exon sequences
Seq C1 exon
GTTCCCAGACAAAGCTCTGAAAGACAACTATTGCCGTAATCCGGATGCATCTGAGCGGCCCTGGTGCTACACCACGGACCCGAATGTTGAGCGAGAGTTCTGTGACCTGCCCAGTTGCG
Seq A exon
NA
Seq C2 exon
GGCCCAACCTGCCACCGACCACCAAAGGATCCAAGTCACAACAGCGCAACAAGGTCAAGGCTTCGAACTGCTTCCGCGGAAAAGGTGAAGACTATCGAGGCACAACCAATACCACCTCTGCGGGTGTGCCCTGCCAGCGCTGGGATGCGCAGAATCCGCACCAGCACCGCTTTGTGCCGGAGAAATATGCTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680-13-8,14-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.344 A=NA C2=0.470
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(50.0=60.9)
A:
NA
C2:
PF0005113=Kringle=PU(53.2=63.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATCCGGATGCATCTGAGCG
R:
TCTTCACCTTTTCCGCGGAAG
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]