BtaALTD0013820-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000004073 | MTA3
Description
Bos taurus metastasis associated 1 family, member 3 (MTA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101964]
Coordinates
chr11:25149674-25156387:+
Coord C1 exon
chr11:25149674-25149814
Coord A exon
chr11:25149815-25149896
Coord C2 exon
chr11:25156301-25156387
Length
82 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
CCGTGTTTCTTTCTCCTCAGATG
3' ss Score
11.49
Exon sequences
Seq C1 exon
GACCCGCGAGTTAGAAGTCATATGTCTCGCCAGGCCATGCAGGGGATGCCAGTCCGAAACACTGGGAGCCCGAAGTCTGCAGTGAAGACCCGTCAAGCTTTCTTCCTTCACACTACATATTTCACAAAATTTGCTCGGCAG
Seq A exon
GTCTGCAAAAATACCCTCCGGCTGCGGCAGGCAGCAAGACGGCCGTTTGTTCCTATTAATTATGCTGCCATTAGGGCAGAAT
Seq C2 exon
ATGCAGACAGACATGCGGATCTATCTGGAAGTCCACTGAAAAGCAAAAGCACTAGGAAGCCTTTGGCATGTATCATTGGGTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004073-29-23,30-23-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGATGCCAGTCCGAAA
R:
GCCAAAGGCTTCCTAGTGCTT
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development