GgaALTD1014789-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009925 | MTA3
Description
metastasis associated 1 family, member 3 [Source:HGNC Symbol;Acc:HGNC:23784]
Coordinates
chr3:23364309-23373779:+
Coord C1 exon
chr3:23364309-23364416
Coord A exon
chr3:23364417-23364498
Coord C2 exon
chr3:23373693-23373779
Length
82 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
TTATTCTTTAAAATTCTCAGATG
3' ss Score
6.98
Exon sequences
Seq C1 exon
GCCACACAAGGAACTCCAGTTCGTAACACTGGAAGTCCAAAGTCAGCTGTGAAAACACGCCAAGCTTTCTTTCTTCACACAACGTGCTGGACAAAACTTGCCCGTCAG
Seq A exon
GTCTGCAAAAATACCCTTCGGCTGCGGCAGGCAGCAAGACGTCCCTTTGTTCCTATTAACTGTGCTGCCATTAAGGCAGAAT
Seq C2 exon
ATGCAGATCGGCACTATGAAATTGCTGGAAATCCTCTGAAGATCAAAAGCACCAGAAAACCACTGTCATGTATCATTGGGTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009925-34-45,35-45-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.615 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACACAAGGAACTCCAGTT
R:
TGACAGTGGTTTTCTGGTGCT
Band lengths:
176-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]