BtaALTD0014468-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000011994 | NDEL1
Description
nudE neurodevelopment protein 1-like 1 [Source:HGNC Symbol;Acc:HGNC:17620]
Coordinates
chr19:28667760-28672316:+
Coord C1 exon
chr19:28667760-28667794
Coord A exon
NA
Coord C2 exon
chr19:28671097-28672316
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAACT
5' ss Score
4.34
3' ss Seq
TGCTCTGGTCACTCCCACAGGGC
3' ss Score
9.29
Exon sequences
Seq C1 exon
GCAAGAAAAAGTCATATTTCCCACGTTGTTCATGG
Seq A exon
NA
Seq C2 exon
GGCAGTAAACGGCTTTGACCCGGCTCCTCCTCCTCCTGGTCTGGGCTCCTCGCGCCCGTCATCAGCACCGGGTATGCTGCCGCTCAGTGTGTGAGTGCCCGGCCTCCAGCTGGGGGCTCCTGCCCCACTCCAAGCACCAGGACACCCACGCCTCACCCCTCGGTGCCTGGGCCCAGCTCGTGCCCCTCCGCCCGCCTCCCCACGGCTGGCAGAGGGCAGGCTGCATGCAGTGGCGGCTGCTGGGCCCGGTCCGGCTCCAGGACTCTGCGCGATATCAATACTGGCTATTTTCTCTTCTCGCCGTAGTGCCGTTGGTTTCACATGATTGCACTTTTGTGGGTCACAAGGTGATACATGCGTGTATTACTCGGTCACTGGATGCAGAAGTACCCATTCATCACAGCATCTCCTAGCCCCGCCCTGCTGTACTGATAGGATTTAGTTGTGTTTAGGACATTGCAGATCTTCTAGAAGTTCTTCCCCAAATCAGGTCAACTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011994-20-20,21-20-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.906
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=PD(5.2=76.9)
A:
NA
C2:
PF048808=NUDE_C=PD(10.4=65.6)
Main Inclusion Isoform:
ENSBTAT00000065091fB4630
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAAAAGTCATATTTCCCACGT
R:
CCGGGCACTCACACACTGA
Band lengths:
137-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development