GgaALTD1015497-2/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000001163 | NDEL1
Description
Nuclear distribution protein nudE-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKH4]
Coordinates
chr18:1696134-1700852:+
Coord C1 exon
chr18:1696134-1696143
Coord A exon
chr18:1696144-1696168
Coord C2 exon
chr18:1698505-1700852
Length
25 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
TGTCTCTTATTGCTTCTCAGGGC
3' ss Score
10.14
Exon sequences
Seq C1 exon
GCGTGAAAAG
Seq A exon
GTGATATTCCCCACCTTGGTCATGG
Seq C2 exon
GGCAGTAAACGGCTTTGATCAAGGGACCCCAGGACTGGGAGCCTCCAGACCATCATCAGCACCTGGCATGCTACCCCTGAGTGTATGAGTCGGCGCCAGGTTGTGCTTGGACTTGCGGACGCTTTTCTCGGCCCAGCAAGAGAAGTGCTTTGGTTTCCTCCCCCTCCCTGCCCCGTGGGAACAGGACCTGCACCATGGCATGCAGCAGTGCCCGTGCTGCTAGAGGAGAGCCCGTGCTTGCAGCCTTTCATGTCCTGTTAATAGAGTTAACTGTAGTGGGTGTGCTCTGTGGCCCCATACCGTGTGTTGCACAAGCTGACACATAGTGCTCTGTTCCAGGGGATGCAGAACCACAGCCAGGTGCTGCTCAACCTGTTACTGCATCTCTTCTCTTAGTTAGGTTTGGCGTGATAAAAACACTTGTGGCTTTTCTTGAAGGCTACACTTCTCCTTGCCTGATCTCACATCCTGCTGTTTAGGCCAACCAGCTGCTGTCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001163-25-13,26-13,27-13,28-13-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.629
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=PD(4.2=61.5)
A:
NA
C2:
PF048808=NUDE_C=PD(9.5=63.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]