GgaEX1039144 @ galGal4
Exon Skipping
Gene
ENSGALG00000001163 | NDEL1
Description
Nuclear distribution protein nudE-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKH4]
Coordinates
chr18:1693160-1700852:+
Coord C1 exon
chr18:1693160-1693311
Coord A exon
chr18:1695107-1695238
Coord C2 exon
chr18:1698505-1700852
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTCCTTTCTCTCCAGCCC
3' ss Score
10.62
5' ss Seq
GAGGTAATC
5' ss Score
7.05
Exon sequences
Seq C1 exon
GCCTTAGAATCCAAATTAGCTGCTTGCAGAAATTTTGCAAAGGACCAGGCATCACGGAAATCCTACATTTCAGGGAATGCTAACAGCAGCATGATGAGCAGCAACGGCACGAAGTACCCTCATCCAGGGCATACTTCTTTCTTTGACAAAGG
Seq A exon
CCCCTGTACTCTCTTCCCTGCCCCAAACTGTCGCTGGAGCCTGAAACAGCCACGCGTGCTCGTAGACCCGGTCCAATCTGCAGCCGCTGCCTTATGAACAGCCAGTTGTTGGGTGGTGGGATTGTGCCAGAG
Seq C2 exon
GGCAGTAAACGGCTTTGATCAAGGGACCCCAGGACTGGGAGCCTCCAGACCATCATCAGCACCTGGCATGCTACCCCTGAGTGTATGAGTCGGCGCCAGGTTGTGCTTGGACTTGCGGACGCTTTTCTCGGCCCAGCAAGAGAAGTGCTTTGGTTTCCTCCCCCTCCCTGCCCCGTGGGAACAGGACCTGCACCATGGCATGCAGCAGTGCCCGTGCTGCTAGAGGAGAGCCCGTGCTTGCAGCCTTTCATGTCCTGTTAATAGAGTTAACTGTAGTGGGTGTGCTCTGTGGCCCCATACCGTGTGTTGCACAAGCTGACACATAGTGCTCTGTTCCAGGGGATGCAGAACCACAGCCAGGTGCTGCTCAACCTGTTACTGCATCTCTTCTCTTAGTTAGGTTTGGCGTGATAAAAACACTTGTGGCTTTTCTTGAAGGCTACACTTCTCCTTGCCTGATCTCACATCCTGCTGTTTAGGCCAACCAGCTGCTGTCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001163_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=0.000 C2=0.629
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(26.5=100)
A:
PF048808=NUDE_C=PD(8.6=51.5)
C2:
PF048808=NUDE_C=PD(9.5=63.3)
Main Inclusion Isoform:
ENSGALT00000001753fB9845
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGGCATCACGGAAATCC
R:
CTCTTGCTGGGCCGAGAAAAG
Band lengths:
252-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]