GgaINT1019495 @ galGal4
Intron Retention
Gene
ENSGALG00000001163 | NDEL1
Description
Nuclear distribution protein nudE-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKH4]
Coordinates
chr18:1696134-1700852:+
Coord C1 exon
chr18:1696134-1696168
Coord A exon
chr18:1696169-1698504
Coord C2 exon
chr18:1698505-1700852
Length
2336 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
TGTCTCTTATTGCTTCTCAGGGC
3' ss Score
10.14
Exon sequences
Seq C1 exon
GCGTGAAAAGGTGATATTCCCCACCTTGGTCATGG
Seq A exon
GTAAATGAATTCATTTGCAATGATAAGCTGCATGCATTTTAACTGCGGTGCTTGGAGGTGCAGAGTTGGTGGATATGCTAACTGCATGAGGTAGTTCTCATAGCATTACAAACTAATAGGCAATGATTGAAGCCTGAGGCTATAATCTCTCTCCTTCTCTTTGCTTTAGATAAGTTTCTCTGGTGCTGTGACCAGTTCCAGCTGTAAGATTGAGTGCTGCTTGCTTTCTTGGTTTAATAACTCTTCAAATATATGCATGTTTCTGATAGAATCGGATGTATCAGAGGTATGGGGTGAAGCATTGCTGCTGTTACCCCAGCTAATCCTAAAGTGAGTTTGCCCTTTGGCCATGTTTCTCCTTCAGCACTGTGCTGGGTGTTGGCCTGTCTTTGGAGGGAGCAGGGATGGCTGTTCCCTGCTGTGTGCAGGGGGTGTCAGGCTGGGTTATTCAGCTCCAGGACAAACTTCTGTTGAGGTTCTGTTTGATGCTTAGAGTTGAGGGAGCCTCAGAGAGGGAGCCGCTTCGTGCTAAGGACAAAATACAGCTTGAAATACAAATTAATGAGTAAAGATCCATCTGGAACAATCAGGGCAGAGGGCAGCTGGAAATGGGCACAAAGTGTTCAGGACAGCAGTCAGAAACGCCCAGCAGGAGCCGCTGCAGGGGATGTTTCCAGCAGGGACTGTTGGCTTGGGATCAATCTGAGGCGCCTGCCCTGATGGACCCATCAAATCAGGGCTGCTGCTTGATCTTCATTTCTGCACCGAGGGTGAATCCAGGCGAGCATTGTGCAGTGTGAGCGTTCCTCGTCCTGCTGTGCCCAGCTCAGCCATGGCTCCTTCTCCCTTTTGTCTCGGGCTTCATGAAATTGTTTGTGACGCCGGTGGCTTAGTCTGGGCCCTGCCACATCTGGGTGGCATCTGTGCGGAGAGCCTGACTGCTTCATGGCCTCTGGGATGCAGAAAAGGGCACCCATGCTGCTAAGTGGGCCTCAGAGCAGGAGCTGAAAAGAGTTACATCCCTTAAAAGTAAAACTCTGCCATTCCTGCCTTGAACGTCTCTTTTCTCTTCCAAAGGAAGCAAACCACTGCATTTTAATCCCATTTATTTTTTTTCTTTCTCCCCTGTGCTACTTGGCAGAGCTGCTTTCTACCTGATAACTCATTTGCAGAGTCATGCTGGGACCAGGTTGGCTTCCTCCCCCTTCATTCACATGAAAATAGCAGAGTACATCTGCTCTAAGACTCTTCCAGCAGCTTTTTGCTGCATGCAGTCGTGGAGGCACCTGCCTCTGCAACGCATTGGAGATCATATCTCAGTCAGTTGAAATTTCAGCCTTAACAGGCAAGGGGATGGCAAAGGTTTCATCCACACAGTCCCATGTGGGATGTGACAGGCTCTGCTGGCGGATGGGGAGGGCTCTGCAGCAGCGAGCCCTGCGTTACCATGGGAAGCCAACCTTGCAAGCGAGCATTCAGGTTCTTCACCTGCTCCTCTGGAACAGTGCTGTAATTGCCAAGCACAGGGAGCACTGGGGCAGCAGTTGGGTGGTGTGCTGTCCTGCTGAGGGGTAACTGCATCTCCTTATCAAGGCTGGGCTGATGGCAAGCAGCAGATGGTGAGCTTAGGTGCAGTGTACTGAGCCTAATTGCAGGAGATCTGTCAAAGCCCAAACAGGGTAGGCTGTGGAAAGCTGTCACACACAGGTGCTGCGCCCCGGGCTGTGTGCCCTCACAACTGAGAGCAGCTTTGGGAAGGGGCAGGCTTGTGGTTTACAGCTAGGTGGAGGCTGTGGGCTCAGGGGCTCAGTAGGGAGGGGTGGGGCAGGCCTGGAGGGCCCCTGAGCCCCTCTGCACCCCCAGCTCTGCTGTGCTTTAACATGTGCTGCCTGTTCTCACTGAGCCCATTCTCCATTACGTGGTTGCACTGCAGCTGTGTGTGTGTGCAGGTGGACAGACATGCCTCCCATCCACTATGTTGGGATCAGCCTGTGTCAAGCCACCTGGGATGAGCAATTGGGCTTGAGAGGAGCCAGCCCTGCTTGGCTTTGCCGAGGGCTGCCTGGGGCCCATAGGCTGGGAGCAGCTGCTGCTGGGCAGAGGGGAAAGACATGGGGAGCAGGCCTGGGGGGCAGCTGTGCTGCCTTTGGCTGTGCCACTCCCGAGGCCCTAGCCCCTTGTACTCTGTGCAGCCACTGTGCAGTCAGCACAGCACTGTCCCTATCACTGGGTGCTGTGGGGGTGTATGTGCAGCAAGGAGGTCCTGGGGTGGAGGGGTTGGGCTCAGCCCCCAGGGTGGACTGGCACTGACCTACCTGTCTCTTATTGCTTCTCAG
Seq C2 exon
GGCAGTAAACGGCTTTGATCAAGGGACCCCAGGACTGGGAGCCTCCAGACCATCATCAGCACCTGGCATGCTACCCCTGAGTGTATGAGTCGGCGCCAGGTTGTGCTTGGACTTGCGGACGCTTTTCTCGGCCCAGCAAGAGAAGTGCTTTGGTTTCCTCCCCCTCCCTGCCCCGTGGGAACAGGACCTGCACCATGGCATGCAGCAGTGCCCGTGCTGCTAGAGGAGAGCCCGTGCTTGCAGCCTTTCATGTCCTGTTAATAGAGTTAACTGTAGTGGGTGTGCTCTGTGGCCCCATACCGTGTGTTGCACAAGCTGACACATAGTGCTCTGTTCCAGGGGATGCAGAACCACAGCCAGGTGCTGCTCAACCTGTTACTGCATCTCTTCTCTTAGTTAGGTTTGGCGTGATAAAAACACTTGTGGCTTTTCTTGAAGGCTACACTTCTCCTTGCCTGATCTCACATCCTGCTGTTTAGGCCAACCAGCTGCTGTCTTCCCCATGAGGCTCAAACCTCTCAAGACACACGGGGGGAGGTTGGGAGCAGGAGAGGAGGCCTGAAATTTGCTCTGGGGGTGCAGCGTAGAAATCACTGCTGGACAGGTGAGCAGCTGACTGTCCATAAGGCCCTTCTCCAGCCCAGCAGATGGGTGTAGAGCTGTTGCTCAGGTGAGGACAGGGGCAGCCAGGGCCAGGATGGCCGCAAGCTGGGGAAGGTTCTTGTAGGCCCAGCACACATCATTGAGCACCAGTATCCTCAGCAGCCCTGGGCTGAGCTTGGCTGGCGCCTCCTCCCTTGGCCTGGGGCCTGCAGCAAGCATCTGTTTCCCATGTGCCTGAACCATCCCCCCCAGTCCTCCTAAGTGACACTTCTGCCCCCCCCCCCCAAAACCAGACATCAGCTCTTTAGGAAGCCGCTCAGCCCAGGGGCTGCAGTGCCCATCAGCTGCCCCCTCCCAACACCCTGTATCCATCGACCCCATGTTCAGCTCTGTAATATAGGACTGGATTTCAGTGTCACCTGCAGGCTTCTGTGACAGTTTTGGGTGACTGTGTACCTTGTGGGTCTTTCAAGCGATGCATTTGTGCAAGTTCTCTGTCGCTGTGCCTCGGAGTTGGTGGATTTTGATGTGAACCAATGCACCCCATGGGGGTCTGAGAAAAAAAAACCTTCCTTCCCAGTTTGGTCCATCGCGTTCCATTGGTTCTGCAGCTGTGCATTTATTTACAAGCGTTGAGAGAAACCACTGGCCCCAGCAGAAGAGGTGGGAGCGTTCCCCCTTTGCCGTTAGGGCCCTTATGGTCCTCCTTTCCTGTGCATCCTCTGCTGCATTTGACTGTTTACATTTGTTTTACTGTACATAGGTTTGTAAACATATTATCTTTGCCTAAGATCTTTGTACATAACTTGGGCTTTGTAGCTTTATTTATTCAAAGTCTATATGGCATGTTTCAATAGGACAGTGTACCATACCACCGTGGTCACACAGCGTAATGTGGCTTAAAGACAAAAAAACCAACAAAACCTGGGAGTAATATTCCAAAAATAAAGTTCTTTTAACGTGGATTGATGGATTTTGCAGAAGAGGCAGCAGTGGCTGTGTTTGTCCTGCACTGTGTTTGGCTGAGCCGTAGGGCTGGGTGGGATGCACTGCTCTGTTGTGCAGCTCCTGCCCCTTATCTTGACACTGCACACAGCGCTGATGCACGGAGCCAGCAGGGCTGAGCACACGTCTGCTCTGGTGCTTTGGGAAGGGAATCTGCTTGGGGTCCTGGTAGAGGTCTCCAGCCACAGGCAATGCTGTCCGGGCCGTCAGGACCCCATGCATCCCTCCAGAGCTGTGCCTGCTCCAGCACAGAGCCGTGTGCTGCTGCTCAGCCCTCCCCAGGTGCTCATGGCACCCACCAAACCCCATCCCCTGCACCAGCAGCTGTCCCCAGCCCACTCATGACCCCGGATCCCAGCACAGCCTTCCTGCTGCTGCCCTGCAGCAAAGCACTCCATGGAAATGCCACCCTGCCAGCTGGTGCCGGAGCAGAGGCACACATGCACTGATGGCAGCTCCTCCCTGGGGGTAAAGTGCTGGGTGGGACGAGAGGGGACACATGGACAGGACTGCCTTCATTGCAGTCAGTTGCCCCCTCACCCCTTAGAAAATCCTCTAACAGCAACAAACTGCTTTTGCACAGAGCCTGAGTGGCCACAGTACCGCAGGGAGAGGAGAGCACAGGCTGTGACATGTAAGGCACGGCACCACCTCTGCAGCACTATCATTCCTTCGCAGCAGGAGCAGCAGCAGCCACAGCCCTGAGGGCAGCCCATGAGGAGCAGGACAGGAGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001163:ENSGALT00000001753:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.629
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=PD(4.2=61.5)
A:
NA
C2:
PF048808=NUDE_C=PD(9.5=63.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]