HsaINT0111708 @ hg38
Intron Retention
Gene
ENSG00000166579 | NDEL1
Description
nudE neurodevelopment protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:17620]
Coordinates
chr17:8460009-8468160:+
Coord C1 exon
chr17:8460009-8460160
Coord A exon
chr17:8460161-8466929
Coord C2 exon
chr17:8466930-8468160
Length
6769 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TGCTCTGGTTGCTCCCACAGGGC
3' ss Score
10.2
Exon sequences
Seq C1 exon
GCTTTAGAATCCAAATTAGCAGCTTGCAGGAATTTTGCAAAGGACCAAGCATCACGAAAATCCTATATTTCAGGGAATGTTAACTGTGGGGTGCTGAATGGCAATGGCACAAAGTTCTCTCGATCAGGGCATACATCTTTCTTCGACAAAGG
Seq A exon
GTAAGTCCTGAATGTTTTAAGTGATAATTTTTTGAGTAGTAAAGTGACAGGTTAGTAAGTGAGCATAATGAAGCCTTGAAAAGGTAAACTCAGCTTGACAAACCTTCCCGAAGCCTGTTATCATTCTAATCTTAGGTGACATGACGTCTGTTGTTGTCCTCTAGTCCCCATGGAGTCTGTTGCCCCAGGAACCCTGAATCTGAGGCTTCTGTCCTGGGAAGCAGACTCTTGAAAGGCAGCAGTGTGAGGCTCTGGTGAGTCAAAATGACTGCGATAAGGTCCCTGTTCTCCAGGTGCTTACAGGCTGGCAGACTTGGAAATATTTTTTTGGGGTAGAAGACAGCATCACAATTAAATATATGCAAACTCTACAACAGACATCCCCTGTGAGAATTTTAGAGAAATATAAAGCCCTGAAGTACTTAGGCACTGGATCAAATACAGTTTAGGAGATACAACTTTTGTATAAAGTTAAGGCTTTTTTGAAGATTGAAATAAAATTGTTTTAAGGTTGAAGCATCCTTAATGCAAAAAATTTCAGTTAGTATGGAAGTATATGAACTAAAAAGTCATGGTTTCCTGCCTTCACACTGTTTCTGCATTCCTTACAGTTATTCCAAGGCATGCCAAATCATATTTTTATGCATCTGCTCTAAGTTGTTTGTAACACAGTTACGGGATTATACTTTAAATATTGCTTTGCAGTGTGCCTATCATGACTTCTATTGCCATTATCTTTCCATGTCATGTATATTATTCTACCTCAATTTACTTATTTATTTTTAAATACTACATGGTAATACGTGGTTGTATGAGTATGCCTTAATATAGGTCACTATTAGGACCCGTGGCCTGGGATGCTCACGGTGTTGCCTAAGGTAGTTGTTATTGAAACAGCCAACAGGCACCCGTGATCCTTGGCTACTGTCTCTGCTTTGAGTCAAAGAGGTAATTCTTGCTTGTTTTTCTCTGAAAGCAGAGCAGGTACAACTCTAGAAACGCTCACAATCTCTGAAAGCAGCTGGGATTTTCTGCCGTCCTCAATAATTATGGCACATGTGTAAAGGAGCAGATTCGACACACGGTGCACTCTGAATAGGCTCTTATCCTTGCAGTGGAGTGTTTTGGTTGATCTCTGTCCCTGATTTTACCCTGGAGAATATACATTTCATTAAGGATTTTGTATTAAAAGCACATCCTAAAACATCACTATACAAATTAGAACTTTATTCTTTCTTAAAAAATTTGTTTAAATAATTTTTGTTTTCTTTTGAAGAGATGGGGGTCTCACTCTGTTGCCTAGGCTGATCTCAAACTCCTGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGCTTGCCGCCGCGCCCAGCTGAAATCAGAACTTTATTCTAACCATTGGGTTTCCTCGGGTGGAGTAAACATAAAATTGATTTTCCTCAGGCTTAGGAGTTTCAGGCAGACTTGCGGCAGCCCTTGTTTTTATAGTGGAATGATAAATGGAATGACTGGATGGTTTTACATGAGCGTAGCCATTTCCCCTGAATGATATGGAGAACTTTTAGGGTAGTCTTCATAAATGTTGGAAGCAGTGCCTAATTATTTTTCCCTACAACTTATAATGATCCTCTACTAGAGTAGTTATTAGTTTCTCCTTGGAATCGTATTTCTTGATGGGCCGCAGGTGCCTTTCATGAGAGCAGGTGTGAATCATAAATGGATAGGTCGGACAGGTGCCTGTGCGTGTGGAAGCCCTGAAGAACAGTCACGAGGAGGGAAGGATAACACTGTCTGTTCAGGGTCGCTACTCCTGCCCGCCACTTGCCTCCCAAGACAGAGCACCAGGGCAGGGATTGCCAAGAGGTGAGCCTGTTCTGAGGGAGATGTGGGGACCTTAGGGTGAGCTGAAGCCAGGAACAGGCCTTGGGCACACTGACTGCACCTCTGCCCCTTGAGAGCATCCGAGATGTAAGTGTAGGCTTTACTTCCTGAGCTGAACCCGGAAATGTGCTGTGCTTCCCAATCGGAACAGTTGCAGATACTGAGTTTTGGTTTTAAATGGTAGACATTTTACATTGTGCCTTTTCTATTAAGAAATATGCTTTTGTGGGCTGGCTGTTGTGTGAGTGTTTAGCTTATATGATAAGTGGATTGTGTATGCGCACTGAAATATTAACCTACTGTTGCTGGAGTTGTCTTTCTAGTTGCTGTATTCCTGAGGATAACTCTTTTGTGGGTTTTGCTGTGTTTTCACTTTCTTGCCGCTTTGCTTCGATTCCGGCTTTTGGCCTGTCTGGCTTTTTACCTCTGGCTTTTCTTCTGCCAACCTGTTGACCAGATAAAAACCAAGATGTTGTGTAGCAGCCGCAAAAGGAAGGGCAGGATATTCCACTTCCCAGGTCCATTATACACTCTGGCAGGTTAAAAACACAAAAGCCTGTCTGTGTAGAAGTGGAGAAGTATGGCTTGTAGTTTCAGCATGAGAAAAGTGCCCCATTTGAAAAAGCCCTCCACTGCAGAACCTGCCTGCCCTCCCTCTCACTCCTGAGGAGTCTGTAGCACCGTGGTGATGGCTCACTAGTGCTGCCAGAAACCTGCGGCAGGATTGTTTGGGGGAGAGACATCATCAAAGTAGGTTTGTGTGTGTGTGCATGTGTGCGGGTGTACATGTGTTCACCTTCCCACCCGCTGAAACTTCAGATGCAGTGAAGCCTTCTCACATAAAACAATATACCTTAACTGGGCGTATTGCTCTGTGGGATTCAAAAGTATTTTGTAAATTCTGGTCACTTGAGGGCTTCTTGGAATCAGGTTTTTGTCTAGTCTGTGAGCACTTCTGCCAGTTCCTGAAACATGGGCTGCCGTGCCTGCTTCCCAGGTGCCGAGCTGTTTCCTTCAACCATGGTCACCCTTTGTCTCACCATCTGAAAGGACACACATTTCATGTGGAGTGTGGTCGCTTGGAGTCTCTCAAAAACACTCTTTTTTTTCCCATAACTTTATGTAGTTTCTTAGGTAACATGTGCTCTATTTTTGTAAGCCACTCTGAGTTCTTTTGGGCTGTGTGTAGGTGGGCATGGACTAATTTTAGGGCGTGATGTGGAAATAGTATTCGTATTACTGTTTAATATGTTCTCCTTTCTTTTATTAGGCAAGAAAAAGTCATATTTCCCACGTTGTTCATGGGTAACTGAATTTGTTTGCTGTGCTCTTTTTCATTCTTTCTTAATCCTGGTGTGTGGTGGAAGACACATTAACAATCTGGTTTTACTAACTGCATGGGGCTGACTCAGCTTTAACCAACTTACAGCCCATCAGTGAACTTTCACGGTCCTGTTCGACTTGACTGTATGCCGTTATTAGTTCAGCTGTGAGAAACAAGAACAAATTAGTTGCAGTGGTCCTGGGGTGGCTGGGAGTAGCATGCCAGGTGGCACGCCTGAGATGGGCTAGGGCGCTGTAGTGTTGATTTCAGAGTCTGGCGATGGGGGTTTGAGGTCACTGTCAGGCCCTGGGATCACCTTTGACTGTCTTCCTGGGACTGGGGGTCTTCCCGTTACCCAGTTGCTTCTGTTTTCTCAAGTCAGGCACCAGTGTGAGCATTCCCTCACCTCTGCGCTCACGCATGGAGTCCCCAGTTAAAATGGAATGGTACATGGGGACGTGTGTAAGATCTGCCTTACATTTCAGAACTGCTTTGCAGTTTGCAGAGCCTGGGCTGAGAACTGGAGCAGGCTGGAGCTGCTCTGAGCCCACACTCATCCACTGAAATAGGAGACTCAGGTGTGGCGTGTGCCTGCCTGCAGGCTCTTCTGGATAGCTTGAGCCCACCCTCCTGCCCTCTCCAGTGTCCTGATCCTTGCTGCTTTGACAGAGTTAATGTTTCCATCCTTCATCTCAGCTGCTTTGGATTTATTGTCCTGAGTAGCTTCTAAGTGTGCCTTGGCTCTTCCCCCTTTTCACTTCTTCCACTGACATTTTACAACTGACCTTAGCACTTTTTCTTAGCTGGATTCTCTATATTTCAGCCTCCTTAACTAGTCTGTGGTGGTAAGATCATGAAATTTTATAGCTCTGGAACCTTTTTTTTACATATATGATTCCCAGATCTGTATCTTCAAGCCTGCCCCATCACTCTTCCTTCAGTCCTGTCTTGTGCACTGGGACATTGCCCTGTGGCTCTTTGCTGCTCCCTGAAACTGAATCTGTTGAATATAGAGTCTCTTCTCTTGCAAATCTTTTCCCCATGCACAGCTTTGCAGGCCTCTGAAGGACTTCACTAGACCTGTCATCCCATCTAGAAGGCCAGCTTTCTTCTCTCTCTGTTCTTTAACTTTCTACTTTTTGAGTCAGGAGAGAGGCGCTAGGTGAGACCCTGGTGGATTGATGTTCCCTCTCTACTCCACCCACCTTCACATTAAGCGTTCCATTTCTGCCCATGTAGAAATTTACCGGTTCTCTCTTTATAGTCTGGGCTGCACCACTTACTTTTCCCATTAGAGCCGGCCTGCATTGGAGTGCCGAAGTGGTTGCTTCTGAGGGCTGCTAGGTGGCCTCTGACCAGGAGGAGACTAGAAAAGGGTCCTGGCCTGGGCATCTGGAGGCAGCTGTGGCCCCGACTTCCCCATCAGTGGCTCACTAGGTGAGCCTAGGCTAATGGCTGGACCTTCTCTTGCTTTGGTTGTCTTGGCAGTGGAACAGTGGGATGAACCTGTTGTTCCTTACGGTGCACTTGAAAATGCCAGAATCCCATCCTCAACCTGCTTGAGGAGCCATCTCCTAGTTGCTGCTTTTGTACACCCCCGTGGCCCAGGTGCCAGATTCTTCTTGGCATCCAATGGTGCTCCCTTTCTGCTGGGTTCCGGGCACTGTCTGCAGTACAGGTTTAGGGGCTTGCCTGCCACTGTGATGTGTGAGGCCAGGAATCTGAGGTTCACACGTGCTGAGAGCTGCAGGCATTTGTGGGGCCTGCCTGGTTGTCCCTGAGGTTTCTAGGAGAAGCAGGTGTCAGGGACTCTGGGACTAGCCAGACAGATGGAGCCTATTATATGAGGGCTACCGTGGCAAATAGGATATGGCCTTGGCCCCAGAAGAGGCACAGGCCTGTGACCTTGGGAGAGTGGGAAGGATGATTTCAAACTTGCAAATGTGTTGAAGCTCAAAAATCAGACCTAACCCAGTGAGGAAAGAGACAATCTGGCTGTTTGTCGTCGAAGTAGGACAGTGTGCAACAGGGAGAAATGACATTTGTCAGAGCCTTTCTCCTGGGGCTCTTGGTCTCTGTATGCGTGGTTGGAATTTAAACTCCACATATGTACTCTGAGTTTAGTTTCTTTAGACATGAACTTTGTTTCTTCCAAGTAGGCAGGGACTATTTGTCAAGTCTCTGCATGCCTGTTTGTCTGTGAGGTTATCCTCACCCCGTCAGTGTACGAAACAGCTGTCTCTGCAGGGAGTGTGTGTCGGCATTTTTTTTTTTTAAGGAGAACCTCTCTCCATGAGTCTGTATTTAGCTCCCTGGAGCCGTCTGATGAGTAGGTGGGGGCAGTAGTGGGCAGGTGTGGTGCAGTGTGGCCCCTTGTCGTAGTTGGCTTTATCTCCCAAATTGCTAGTGGGACAAATTTTCCTAGGAAGCGTTTCAAGGTGGAAAGGCTGAAGTGGCTCCTGAGAGAGGTTCCAGGCTGCACACTCCCTCCCCCTCTTGCTGCTTCCTGTGGCTGCGCTGCATGGTGCGTGAGGGGGATGCTTGGGGGGCTCCCTGCATCGCTGGGCTCTGGGTGCGTGATGGGGACGCTGGGGGGCTCCCTGTGTCGCTGGGCTCCGGGTGCTGGGTCCTGGCTGCAGGCTATTGGGTTGGGCTGGGCTGTCTGCACACGAGTCTGCGTTGAAAAGCCTACTCATCTGGCGTTGCTTGCTAAACAATTTTTAAAAGGTTATTTTTCTCCACCTTATTAAGATATTCGTGTATTAATACATTATATTTGGAAAATGTAAGGAGATTTGGAAAATGATTAAAAAAGGATAAAGTAGTAAACAAAATTCACCCACAGCCCAGAGGGAAGAAAAGTAACGATTCTTAAATTTTCTTTTTATGATATATATGATCCTATGTACATATATGTTGGTGTGTGTATATATATATGTGTATGCGTATATATAATGTATGTATATATACATTTATTTATACACACTCCCCCTCTGTCCCTGCTTTGTGGATTTAGCTGCATGGATAGTAATGTCTATCTAAGGGGCTATAGTCTAGAATCTAGAATATATACTATTTGCTTTTTTTTCTTTCATATCATTGAATCTACAGAGTTTGGTAACCTGCATCTTTTTCCACTTAGTGTTAGTTACATTCTGAATATTTTCCCATGCTATTAAAAAACTTGTGGAATGTGTTTTTAATGGCTGTGCAATATCTTATTGTTCAGTTGTACCATTATTTATTTAACTAGTTCCCTATTGCCAGGCATTTAGACCTGCTTTATGGGGAAAGAATCAGGACTGTGGCTTCCGTGGCCAGTGTGCGGCAGTTGCCAAACAGGTCATGTGGTCCTGGTTCCCCAGGATTCCCAAAGGCTCAATTCTCTAACCAGCTGGTGCTTTCCAGGCAGCCAGTGCCCCTTGGGCCATCAGGACCCTACAGCCTGCGAGGAATAGTTTTAGAAAGCAGATTAATTTCCTATTGTGTGTGAGTGATTTTAAATGAGTTTTTCGTTTCCCCTTTCTTCCCTTCTGTGCTCTGGTTGCTCCCACAG
Seq C2 exon
GGCAGTAAACGGCTTTGACCCCGCTCCTCCTCCTCCTGGTCTGGGCTCCTCGCGTCCATCGTCAGCGCCGGGTATGCTGCCTCTCAGTGTGTGAGTGCCTAGCCTCCAGGTGGGGGCTCCTGCCCTCCTCCAACAACCCAGGACACCCACGCCTCACCCCTCGGTGCCTGGGCCCAGCCCCGTGCCCCTCCGTCTGCCTCCGCACGGCTGGCAGAGGGCAGGCTGCATGCAGTGGCGGCTACTGGGCCCTGCCCAGCCCCGGAACTCTGCGCGATATCAATACTGGCTATTTTCTCTTCTCGCCGTAGTGCCGTTGGTTTCACATGATTGCACTTTTGTGGGTCGCAAGGTGATACATACGTGTATTACTTGGTCACTGGATGCAGAAGTACCCATTCATCACACCTGCCCCATAGCCCCCACTCTGCTGTACTGATAGGATTTAGTTGTGTTTTAGGACATTGCAAATCTTCTAGAAGTTCTCCCCCAAATCAGGTCAATGTGTGCCCTCCTGAGCTCCCACCCAGGCATCTCCAGTGCTCATGATCATGTGTCCCCCAACTCCACCCCTCACAGTTTGGGCCTGTTTCTGGCAAAGAGTCAGGAAGGTTACTGAATTAGGGAACATTTTCTGCACCTTCTGATTTTACTTAAGCAGCTACCATTCCATGGACTTGCCTCCCAGAGCAGCACAATGCCCGTCTGAGCCCCACGTGGCAGGAGCCTCTGGGACGGGGCACACACAGGCCCAGCCTCTGTGCTGTCTCCTCCTCCGTGCGCCTCAGACTCGGGGTGAGGGAGGCGGGCAGCCTCTCGCCAGCCTTCCCGTCCTTCAGTTCAACGACATCTTTGGAGTGTTTTTGTTTTCTCTTCCAAGGGCCGTCCCGTTGTGTTAGGAAGGGTGAGTGGCTGGTTCCAGGGTGGGCCGGTGCCAGCTCCGGGGTGGACTGAACAGCGGCGGCTGTCCCTGTGCATCCTTTGATTACTCTCATGCTGCATTTACTGTTTACATTTGTTTTATTGTACATAGGTTTGTAAACATTATTGCCTGAGATATTTGTATATAACTTGGGCTTTGTAGCTTTTATTTATTCAGAACGCATACGGCATGTTAATGACTCTGATGGTGTCCTCCTCTGGGCAGCTGTATAGGATCATCATGTGGTTACAAAAAATACTTCCCTCAAAAAAATTCTTTTAATGTGGAAACAATAAATTTCACAGAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166579:ENST00000334527:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.777
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(24.8=100)
A:
NA
C2:
PF048808=NUDE_C=PD(10.4=65.6)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development