HsaINT0111708 @ hg19
Intron Retention
Gene
ENSG00000166579 | NDEL1
Description
nudE nuclear distribution E homolog (A. nidulans)-like 1 [Source:HGNC Symbol;Acc:17620]
Coordinates
chr17:8363327-8366672:+
Coord C1 exon
chr17:8363327-8363478
Coord A exon
chr17:8363479-8366637
Coord C2 exon
chr17:8366638-8366672
Length
3159 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
GTTCTCCTTTCTTTTATTAGGCA
3' ss Score
9.41
Exon sequences
Seq C1 exon
GCTTTAGAATCCAAATTAGCAGCTTGCAGGAATTTTGCAAAGGACCAAGCATCACGAAAATCCTATATTTCAGGGAATGTTAACTGTGGGGTGCTGAATGGCAATGGCACAAAGTTCTCTCGATCAGGGCATACATCTTTCTTCGACAAAGG
Seq A exon
GTAAGTCCTGAATGTTTTAAGTGATAATTTTTTGAGTAGTAAAGTGACAGGTTAGTAAGTGAGCATAATGAAGCCTTGAAAAGGTAAACTCAGCTTGACAAACCTTCCCGAAGCCTGTTATCATTCTAATCTTAGGTGACATGACGTCTGTTGTTGTCCTCTAGTCCCCATGGAGTCTGTTGCCCCAGGAACCCTGAATCTGAGGCTTCTGTCCTGGGAAGCAGACTCTTGAAAGGCAGCAGTGTGAGGCTCTGGTGAGTCAAAATGACTGCGATAAGGTCCCTGTTCTCCAGGTGCTTACAGGCTGGCAGACTTGGAAATATTTTTTTGGGGTAGAAGACAGCATCACAATTAAATATATGCAAACTCTACAACAGACATCCCCTGTGAGAATTTTAGAGAAATATAAAGCCCTGAAGTACTTAGGCACTGGATCAAATACAGTTTAGGAGATACAACTTTTGTATAAAGTTAAGGCTTTTTTGAAGATTGAAATAAAATTGTTTTAAGGTTGAAGCATCCTTAATGCAAAAAATTTCAGTTAGTATGGAAGTATATGAACTAAAAAGTCATGGTTTCCTGCCTTCACACTGTTTCTGCATTCCTTACAGTTATTCCAAGGCATGCCAAATCATATTTTTATGCATCTGCTCTAAGTTGTTTGTAACACAGTTACGGGATTATACTTTAAATATTGCTTTGCAGTGTGCCTATCATGACTTCTATTGCCATTATCTTTCCATGTCATGTATATTATTCTACCTCAATTTACTTATTTATTTTTAAATACTACATGGTAATACGTGGTTGTATGAGTATGCCTTAATATAGGTCACTATTAGGACCCGTGGCCTGGGATGCTCACGGTGTTGCCTAAGGTAGTTGTTATTGAAACAGCCAACAGGCACCCGTGATCCTTGGCTACTGTCTCTGCTTTGAGTCAAAGAGGTAATTCTTGCTTGTTTTTCTCTGAAAGCAGAGCAGGTACAACTCTAGAAACGCTCACAATCTCTGAAAGCAGCTGGGATTTTCTGCCGTCCTCAATAATTATGGCACATGTGTAAAGGAGCAGATTCGACACACGGTGCACTCTGAATAGGCTCTTATCCTTGCAGTGGAGTGTTTTGGTTGATCTCTGTCCCTGATTTTACCCTGGAGAATATACATTTCATTAAGGATTTTGTATTAAAAGCACATCCTAAAACATCACTATACAAATTAGAACTTTATTCTTTCTTAAAAAATTTGTTTAAATAATTTTTGTTTTCTTTTGAAGAGATGGGGGTCTCACTCTGTTGCCTAGGCTGATCTCAAACTCCTGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGCTTGCCGCCGCGCCCAGCTGAAATCAGAACTTTATTCTAACCATTGGGTTTCCTCGGGTGGAGTAAACATAAAATTGATTTTCCTCAGGCTTAGGAGTTTCAGGCAGACTTGCGGCAGCCCTTGTTTTTATAGTGGAATGATAAATGGAATGACTGGATGGTTTTACATGAGCGTAGCCATTTCCCCTGAATGATATGGAGAACTTTTAGGGTAGTCTTCATAAATGTTGGAAGCAGTGCCTAATTATTTTTCCCTACAACTTATAATGATCCTCTACTAGAGTAGTTATTAGTTTCTCCTTGGAATCGTATTTCTTGATGGGCCGCAGGTGCCTTTCATGAGAGCAGGTGTGAATCATAAATGGATAGGTCGGACAGGTGCCTGTGCGTGTGGAAGCCCTGAAGAACAGTCACGAGGAGGGAAGGATAACACTGTCTGTTCAGGGTCGCTACTCCTGCCCGCCACTTGCCTCCCAAGACAGAGCACCAGGGCAGGGATTGCCAAGAGGTGAGCCTGTTCTGAGGGAGATGTGGGGACCTTAGGGTGAGCTGAAGCCAGGAACAGGCCTTGGGCACACTGACTGCACCTCTGCCCCTTGAGAGCATCCGAGATGTAAGTGTAGGCTTTACTTCCTGAGCTGAACCCGGAAATGTGCTGTGCTTCCCAATCGGAACAGTTGCAGATACTGAGTTTTGGTTTTAAATGGTAGACATTTTACATTGTGCCTTTTCTATTAAGAAATATGCTTTTGTGGGCTGGCTGTTGTGTGAGTGTTTAGCTTATATGATAAGTGGATTGTGTATGCGCACTGAAATATTAACCTACTGTTGCTGGAGTTGTCTTTCTAGTTGCTGTATTCCTGAGGATAACTCTTTTGTGGGTTTTGCTGTGTTTTCACTTTCTTGCCGCTTTGCTTCGATTCCGGCTTTTGGCCTGTCTGGCTTTTTACCTCTGGCTTTTCTTCTGCCAACCTGTTGACCAGATAAAAACCAAGATGTTGTGTAGCAGCCGCAAAAGGAAGGGCAGGATATTCCACTTCCCAGGTCCATTATACACTCTGGCAGGTTAAAAACACAAAAGCCTGTCTGTGTAGAAGTGGAGAAGTATGGCTTGTAGTTTCAGCATGAGAAAAGTGCCCCATTTGAAAAAGCCCTCCACTGCAGAACCTGCCTGCCCTCCCTCTCACTCCTGAGGAGTCTGTAGCACCGTGGTGATGGCTCACTAGTGCTGCCAGAAACCTGCGGCAGGATTGTTTGGGGGAGAGACATCATCAAAGTAGGTTTGTGTGTGTGTGCATGTGTGCGGGTGTACATGTGTTCACCTTCCCACCCGCTGAAACTTCAGATGCAGTGAAGCCTTCTCACATAAAACAATATACCTTAACTGGGCGTATTGCTCTGTGGGATTCAAAAGTATTTTGTAAATTCTGGTCACTTGAGGGCTTCTTGGAATCAGGTTTTTGTCTAGTCTGTGAGCACTTCTGCCAGTTCCTGAAACATGGGCTGCCGTGCCTGCTTCCCAGGTGCCGAGCTGTTTCCTTCAACCATGGTCACCCTTTGTCTCACCATCTGAAAGGACACACATTTCATGTGGAGTGTGGTCGCTTGGAGTCTCTCAAAAACACTCTTTTTTTTCCCATAACTTTATGTAGTTTCTTAGGTAACATGTGCTCTATTTTTGTAAGCCACTCTGAGTTCTTTTGGGCTGTGTGTAGGTGGGCATGGACTAATTTTAGGGCGTGATGTGGAAATAGTATTCGTATTACTGTTTAATATGTTCTCCTTTCTTTTATTAG
Seq C2 exon
GCAAGAAAAAGTCATATTTCCCACGTTGTTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166579-NDEL1:NM_001025579:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(24.8=100)
A:
NA
C2:
PF048808=NUDE_C=PD(5.2=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)