HsaEX0042212 @ hg19
Exon Skipping
Gene
ENSG00000166579 | NDEL1
Description
nudE nuclear distribution E homolog (A. nidulans)-like 1 [Source:HGNC Symbol;Acc:17620]
Coordinates
chr17:8363327-8371478:+
Coord C1 exon
chr17:8363327-8363478
Coord A exon
chr17:8366638-8366672
Coord C2 exon
chr17:8370248-8371478
Length
35 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCTTTCTTTTATTAGGCA
3' ss Score
9.41
5' ss Seq
TGGGTAACT
5' ss Score
4.34
Exon sequences
Seq C1 exon
GCTTTAGAATCCAAATTAGCAGCTTGCAGGAATTTTGCAAAGGACCAAGCATCACGAAAATCCTATATTTCAGGGAATGTTAACTGTGGGGTGCTGAATGGCAATGGCACAAAGTTCTCTCGATCAGGGCATACATCTTTCTTCGACAAAGG
Seq A exon
GCAAGAAAAAGTCATATTTCCCACGTTGTTCATGG
Seq C2 exon
GGCAGTAAACGGCTTTGACCCCGCTCCTCCTCCTCCTGGTCTGGGCTCCTCGCGTCCATCGTCAGCGCCGGGTATGCTGCCTCTCAGTGTGTGAGTGCCTAGCCTCCAGGTGGGGGCTCCTGCCCTCCTCCAACAACCCAGGACACCCACGCCTCACCCCTCGGTGCCTGGGCCCAGCCCCGTGCCCCTCCGTCTGCCTCCGCACGGCTGGCAGAGGGCAGGCTGCATGCAGTGGCGGCTACTGGGCCCTGCCCAGCCCCGGAACTCTGCGCGATATCAATACTGGCTATTTTCTCTTCTCGCCGTAGTGCCGTTGGTTTCACATGATTGCACTTTTGTGGGTCGCAAGGTGATACATACGTGTATTACTTGGTCACTGGATGCAGAAGTACCCATTCATCACACCTGCCCCATAGCCCCCACTCTGCTGTACTGATAGGATTTAGTTGTGTTTTAGGACATTGCAAATCTTCTAGAAGTTCTCCCCCAAATCAGGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166579-'11-13,'11-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.906
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(24.8=100)
A:
PF048808=NUDE_C=PD(5.2=76.9)
C2:
PF048808=NUDE_C=PD(10.4=65.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACTGTGGGGTGCTGAATGG
R:
CAGACCAGGAGGAGGAGGAG
Band lengths:
115-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)