MmuEX0031226 @ mm10
Exon Skipping
Gene
ENSMUSG00000018736 | Ndel1
Description
nudE neurodevelopment protein 1 like 1 [Source:MGI Symbol;Acc:MGI:1932915]
Coordinates
chr11:68821434-68830066:-
Coord C1 exon
chr11:68829915-68830066
Coord A exon
chr11:68826170-68826204
Coord C2 exon
chr11:68821434-68822665
Length
35 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTTTTTTTTATTAGGCA
3' ss Score
9.7
5' ss Seq
TGGGTAACT
5' ss Score
4.34
Exon sequences
Seq C1 exon
GCTTTAGAATCCAAGTTAGCCGCTTGCAGGAACTTTGCAAAAGACCAAGCATCCCGCAAATCTTATGTTCCAGGGAGCGTTAACTGTGGGGTAATGAACAGCAATGGCCCAGAGTGCCCAAGGTCAGGGCGAGCAACTTTCTTCCATAAAGG
Seq A exon
GCAAGAAAAAGTCATATTTCCCACGTTGTTCATGG
Seq C2 exon
GGCAGTAAATGGCTTTGATCCAGCTCCTCCTCCTCCTGGGCTGGGCTCCTCACGCCCATCGTCAGCACCGGGTATGCTGCCTCTCAGTGTGTGAGTGCCCGGCCTCCAGGTGGGGCCCCTGCCCTCTTCCAGCAGCCCAGGACACCTACGCCTCGTCCCTCGGTGCCTGGGTCCAGCCCTGTGCCCCTCTGTCCGCCTCTTCACCGCTGGCAGAGGGCAGGCTGCATGCAGTGGCGGCTGCTGGGCCCTGCCCAGCCCCAGGACTCTGCGCGATATCAATACTGGCTATTTTCTCTTCTCGCCGTAGTGCCGTTGGTTTCACATGATTGCACTTTTGTGGGTCACAAGTGATACATACGTGTATTACTCGATCACTGGATGTGGAAGTACCCATTCATCACATCTGCCTCATAGCCCCCATCTTTGCTGTGCTGATAGGATTTAGTTGTGTTTAGGACATTGCAGATCTTCTAGAAGTTTCCCCTCAATCAGGTTGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018736_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.240 A=0.000 C2=0.909
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(24.8=100)
A:
NA
C2:
PF048808=NUDE_C=PD(10.4=65.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAGGGAGCGTTAACTGT
R:
GAGGAGGAGGAGCTGGATCAA
Band lengths:
121-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types