DreEX0049757 @ danRer10
Exon Skipping
Gene
ENSDARG00000010953 | ndel1a
Description
nudE neurodevelopment protein 1-like 1a [Source:ZFIN;Acc:ZDB-GENE-040115-2]
Coordinates
chr12:26388817-26396003:+
Coord C1 exon
chr12:26388817-26388965
Coord A exon
chr12:26390371-26390405
Coord C2 exon
chr12:26395029-26396003
Length
35 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCTCTCCTCAGCAGAAG
3' ss Score
7.51
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
GCTTTGGAGTCTAAGCTCGCAGCTTGTCGAAATTTTGCAAAGGACCAGGCAGCCAGAAAGAACTATGTTACCAACGTCAACGGCAATCTGATTAATGGCGACATTTCAAATTACTCTCATTCGCTCCACACATCCTACTTCGACAAAGC
Seq A exon
AAGAGAGAGGGTCATTTTCCCTGCGTTACTCTTGG
Seq C2 exon
CAGGACGGTGAACGGTTTGGACCCCGGTGACGCGACACACATCACAGCCCCACCGCGATCCAACTCTCCATCTGGCCTGGTCCTCAGCGTATAAAACACACTCAGACTCCATTTATATCCACTATACAGCAATATAATACACTACTGAAGCTGAGTCCACCCTACAGTGGGGTTTACAACAAGGTTGGTAATGGGAGCCCTTCTGTAGCAGCACCTCATAACTCGGTTATAGTCTCGGTTCGCAATATACTACATGAAGTACTTGTTAATAGTTGTTAAAGATGTACAGTATATACCCTGACCTAATATATTTATGGTTACCGTTCATTTAGCATTCATGTACATATTTACGTTGTTTTCTGTTTGTTATGGATGTGATGTCTTCTAACACAATCCAAAAAATGTATTTATTGCTATAGTGTTGGATCGCAACGTATGTGAAACCTGAAAACAAAGGGAATTTATAATATTAATGTATGTTGTGCGATAACTGCACCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010953_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.562
Domain overlap (PFAM):
C1:
PF0076914=ERM=PD(12.9=54.0),PF048808=NUDE_C=FE(24.3=100)
A:
PF048808=NUDE_C=PD(4.8=69.2)
C2:
PF048808=NUDE_C=PD(10.9=68.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCCACACATCCTACTTCG
R:
TTATACGCTGAGGACCAGGCC
Band lengths:
122-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]