DreALTA0018154-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000010953 | ndel1a
Description
nudE neurodevelopment protein 1-like 1a [Source:ZFIN;Acc:ZDB-GENE-040115-2]
Coordinates
chr12:26388817-26390405:+
Coord C1 exon
chr12:26388817-26388965
Coord A exon
chr12:26390368-26390370
Coord C2 exon
chr12:26390371-26390405
Length
3 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
TTATGTGTTTCTCTCCTCAGCAG
3' ss Score
9.1
Exon sequences
Seq C1 exon
GCTTTGGAGTCTAAGCTCGCAGCTTGTCGAAATTTTGCAAAGGACCAGGCAGCCAGAAAGAACTATGTTACCAACGTCAACGGCAATCTGATTAATGGCGACATTTCAAATTACTCTCATTCGCTCCACACATCCTACTTCGACAAAGC
Seq A exon
CAG
Seq C2 exon
AAGAGAGAGGGTCATTTTCCCTGCGTTACTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010953-12-13,12-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0076914=ERM=PD(12.9=54.0),PF048808=NUDE_C=FE(24.3=100)
A:
NA
C2:
PF048808=NUDE_C=PD(4.8=69.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCAATCTGATTAATGGCGA
R:
AGAGTAACGCAGGGAAAATGACC
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]