BtaEX0024068 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011994 | NDEL1
Description
nudE neurodevelopment protein 1-like 1 [Source:HGNC Symbol;Acc:HGNC:17620]
Coordinates
chr19:28664181-28672316:+
Coord C1 exon
chr19:28664181-28664332
Coord A exon
chr19:28667760-28667794
Coord C2 exon
chr19:28671097-28672316
Length
35 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTTTTTTTATTAGGCA
3' ss Score
9.24
5' ss Seq
TGGGTAACT
5' ss Score
4.34
Exon sequences
Seq C1 exon
GCTTTAGAATCCAAATTAGCAGCTTGCAGGAATTTTGCAAAGGACCAAGCATCACGAAAATCCTATATTTCAGGGAATGTTAACTGTGGGGTGATGAATAGCAATGGCACGAAGTTCTCTCGATCAGGGCACACGTCTTTCTTTGACAAAGG
Seq A exon
GCAAGAAAAAGTCATATTTCCCACGTTGTTCATGG
Seq C2 exon
GGCAGTAAACGGCTTTGACCCGGCTCCTCCTCCTCCTGGTCTGGGCTCCTCGCGCCCGTCATCAGCACCGGGTATGCTGCCGCTCAGTGTGTGAGTGCCCGGCCTCCAGCTGGGGGCTCCTGCCCCACTCCAAGCACCAGGACACCCACGCCTCACCCCTCGGTGCCTGGGCCCAGCTCGTGCCCCTCCGCCCGCCTCCCCACGGCTGGCAGAGGGCAGGCTGCATGCAGTGGCGGCTGCTGGGCCCGGTCCGGCTCCAGGACTCTGCGCGATATCAATACTGGCTATTTTCTCTTCTCGCCGTAGTGCCGTTGGTTTCACATGATTGCACTTTTGTGGGTCACAAGGTGATACATGCGTGTATTACTCGGTCACTGGATGCAGAAGTACCCATTCATCACAGCATCTCCTAGCCCCGCCCTGCTGTACTGATAGGATTTAGTTGTGTTTAGGACATTGCAGATCTTCTAGAAGTTCTTCCCCAAATCAGGTCAACTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011994_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.906
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(24.8=100)
A:
PF048808=NUDE_C=PD(5.2=76.9)
C2:
PF048808=NUDE_C=PD(10.4=65.6)
Main Inclusion Isoform:
ENSBTAT00000065091fB4630
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTCTCGATCAGGGCACA
R:
CATACCCGGTGCTGATGACG
Band lengths:
116-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development