RnoEX0058764 @ rn6
Exon Skipping
Gene
ENSRNOG00000004139 | Ndel1
Description
nudE neurodevelopment protein 1-like 1 [Source:RGD Symbol;Acc:621235]
Coordinates
chr10:55411901-55419995:-
Coord C1 exon
chr10:55419844-55419995
Coord A exon
chr10:55416272-55416306
Coord C2 exon
chr10:55411901-55413110
Length
35 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCTTTTTTTTATTAGGCA
3' ss Score
9.34
5' ss Seq
TGGGTAACT
5' ss Score
4.34
Exon sequences
Seq C1 exon
GCTTTAGAATCCAAGTTAGCAGCTTGCAGGAACTTTGCAAAAGACCAAGCATCCCGAAAATCCTATGTTCCAGGGAGCGTTAACTGTGGGGTAATGAACAGCAACGGTCCAGAGTGCCCAAGGTCAGGGCGTGCAACTTTCTTCCATAAAGG
Seq A exon
GCAAGAAAAAGTCATATTCCCCACGTTGTTCATGG
Seq C2 exon
GGCAGTAAACGGCTTTGATCCAGCTCCTCCTCCTCCTGGGCTGGGCTCCTCACGCCCATCGTCAGCACCGGGTATGCTGCCTCTCAGTGTGTGAGTGCCCGGCCTCCAGGTGGGGCCCCTGCCCTCTTCCAGCAGCCCAGGACACCTACGCCTCGTCCCTCGGTGCCTGGGTCCAGCCCTGTGCCCCTCTGTCTGCCTCTTCACCGCTGGCAGAGGGCAGGCTGCATGCAGTGGCCGCTGCTGGGCCCTGCCCAGCCCCAGGACTCTGCGCGATATCAATACTGGCTATTTTCTCTTCTCGCCGTAGTGCCGTTGGTTTCACATGATTGCACTTTTGTGGGTCCCAAGTGATACACACATACATACGTGTGTTTCTCGATCACTGGATGTGGAAGCACCCGTTCATCACATCTGCCTCATAGCCCCCATATTGCTGTGCTGATAGGATTTAGTTGTGTTTAGGACATTGCAGATCTTCTAGAAGTTTCCCTCAATCAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004139_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.000 C2=0.947
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(24.8=100)
A:
PF048808=NUDE_C=PD(5.2=76.9)
C2:
PF048808=NUDE_C=PD(10.4=65.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTATGTTCCAGGGAGCGTT
R:
GGAGCTGGATCAAAGCCGTTT
Band lengths:
119-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]