GgaEX1039143 @ galGal4
Exon Skipping
Gene
ENSGALG00000001163 | NDEL1
Description
Nuclear distribution protein nudE-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKH4]
Coordinates
chr18:1693160-1700852:+
Coord C1 exon
chr18:1693160-1693311
Coord A exon
chr18:1696134-1696168
Coord C2 exon
chr18:1698505-1700852
Length
35 bp
Sequences
Splice sites
3' ss Seq
TTTCACTTTTTCTCCACTAGGCG
3' ss Score
10.55
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
GCCTTAGAATCCAAATTAGCTGCTTGCAGAAATTTTGCAAAGGACCAGGCATCACGGAAATCCTACATTTCAGGGAATGCTAACAGCAGCATGATGAGCAGCAACGGCACGAAGTACCCTCATCCAGGGCATACTTCTTTCTTTGACAAAGG
Seq A exon
GCGTGAAAAGGTGATATTCCCCACCTTGGTCATGG
Seq C2 exon
GGCAGTAAACGGCTTTGATCAAGGGACCCCAGGACTGGGAGCCTCCAGACCATCATCAGCACCTGGCATGCTACCCCTGAGTGTATGAGTCGGCGCCAGGTTGTGCTTGGACTTGCGGACGCTTTTCTCGGCCCAGCAAGAGAAGTGCTTTGGTTTCCTCCCCCTCCCTGCCCCGTGGGAACAGGACCTGCACCATGGCATGCAGCAGTGCCCGTGCTGCTAGAGGAGAGCCCGTGCTTGCAGCCTTTCATGTCCTGTTAATAGAGTTAACTGTAGTGGGTGTGCTCTGTGGCCCCATACCGTGTGTTGCACAAGCTGACACATAGTGCTCTGTTCCAGGGGATGCAGAACCACAGCCAGGTGCTGCTCAACCTGTTACTGCATCTCTTCTCTTAGTTAGGTTTGGCGTGATAAAAACACTTGTGGCTTTTCTTGAAGGCTACACTTCTCCTTGCCTGATCTCACATCCTGCTGTTTAGGCCAACCAGCTGCTGTCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001163-'23-13,'23-12,26-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=0.000 C2=0.629
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(26.5=100)
A:
PF048808=NUDE_C=PD(4.2=61.5)
C2:
PF048808=NUDE_C=PD(9.5=63.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGAAGTACCCTCATCCAG
R:
CCAGGTGCTGATGATGGTCTG
Band lengths:
112-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]