MmuINT0106835 @ mm10
Intron Retention
Gene
ENSMUSG00000018736 | Ndel1
Description
nudE neurodevelopment protein 1 like 1 [Source:MGI Symbol;Acc:MGI:1932915]
Coordinates
chr11:68821434-68830066:-
Coord C1 exon
chr11:68829915-68830066
Coord A exon
chr11:68822666-68829914
Coord C2 exon
chr11:68821434-68822665
Length
7249 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CTATTCTGGTCACCCCACAGGGC
3' ss Score
9.14
Exon sequences
Seq C1 exon
GCTTTAGAATCCAAGTTAGCCGCTTGCAGGAACTTTGCAAAAGACCAAGCATCCCGCAAATCTTATGTTCCAGGGAGCGTTAACTGTGGGGTAATGAACAGCAATGGCCCAGAGTGCCCAAGGTCAGGGCGAGCAACTTTCTTCCATAAAGG
Seq A exon
GTAAGTCCTTGACTTTATTTATTTATTTATTTATTTATTTATTTATTTGCAGTTCTAGGGCTGAGACAAAGCTAGGGCTTCATATGTGCCAGACAGTCATCCTGTCCCTGAGCTACAGCCCCAGTCCTTAGACTCACTGATGAGGTCTAGTGAGTTTGCAGAGTCTTAAGTGAGGTTACCAGAGTCCTGAAGGTCACACAGACTAATAAGTTTCCTGCTCTTCTTGTTCAAGTCCCAGAAGAGAGAGATCTGTTATTGTCTTGTGGTTTCCAAGGAGTTTGCTGCCCCTGGAATCTACAGCTTCTTTCCTGGGCATAGACTCTTACAGGCAACTGTGCTGGGCTCAGGAGGATCTGCAGAGCTCCTGTGGGCCTGCTCTCCAGATCCTTACAGCGTGGGAGACTCAGCAAATCTTCTTTAAGGACAGGGGAGATAGTTTGTACATAGCCTGTATGTCAGACCTTTTATTTGAAGATTTTAGAAAAATACAAAGTTCTAAAGTATTTAGACACTGGGTAATATACAAGTGAGAGTCCAAGGCCAGCCTGGTACTTAGTGTGTTTCCAACTGGCTAGAGCTTCATTGTGAGACTGACTTAAAAAAAAAAAAAAAGTGTGTGTGCACGCTTATATTTAAAAACAAAAAAGCTTTAAGCTTAAAGCAGTGGTATATTGTTAGTGAAAACATTTCAGTTGGCATAGAGTATGTGCACTAAAAAGTAAGCTTCCTATTTTCACACTATTGTGGCTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCATTCATTCATGTGTATGAGTACACTGTAGCTGTCTTCAGACACACCAGAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTAGAAGAACAATCAGTGCTCTTAACCGCTGAGCCATCTCACCAGCCCGTGGCCATTTCTTAGAGTTAATTTTCAGGCATGTAAAAATCAGATTTTTATGCATCTGCTGTAAGCTGTTTACAGCACATTTACAAGAGTGCAGTTTAAATATTGCTCAGTAGCTTGCCTGTTTTGATTTACATTGCCGGTATCTTTCCATGTCAGTCTGTTTCATTCTGCCTTGTTTTGTTTTCTCTCTAATATGCATAGCTGTCTTCTTGTTCTAGGTAGGGAGCTAGTTAGGTCCTATACTCTGTCTGCTAGGCACAGTACCTCAGGTAGCTGTTGTTACTGGAACAGCAGCTGCCCTGCTCATGATCCCTCACCATTGTCTCTTGTGAGCCGAATAGGCAGCTTTAAAAACAAAACAGAACAAAGCAGGGACAGCTCTAGAAAACGTCACAGTATTTTTAAAGGTGCTTATATTTCTGATGTCCTCAGTATTTACAGCTTGCTTATGGATGACCCGATTGTTATATACAACTTTGCTGTTGTTTTTGGTTTTGAGACAGACTCTCACTATCGAGCCCTGGTTGTCACGGTGCTCACTCTGTAGACCAGGCTAGCTCTAGCCCACAGATCCACCTGTGCTGGAGCTGCAGGCATGTACCACCATGCTCAGCTGCAGTCTGCTGTGGAAAAGAGTTTTAAGGCCAGGCTTGCTTACATGCTTTTAATTCCTGCCACTGGGGAGGTGAGTTCAAGAGTGGACTACAAAGTGAGTCTAGGAGAGCCAGGGCTACACAGAGAAGCAAGAAACCCCGTCTCAAAAAACCAAAACCGCATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGAGTGGGTGGGTAGGGGAGTGGGTGGGTAGGGGAGAGGGGGTGGGTGGCTATGGGGGACTTTTGGTATAGCATTGCAAATGTAAATGAGCGAAATACCTAATAAAAAATGGAAAAAAAAAAAAAACAAAAAACAAAAAACCAAAACCAAACCAAAAACAAAACAAAAAAAAAAGAATTGTTCATCCTGTAGTGGAGAATCATGGCCTATTTCTGTCTTGAAAAGGATACAACAAGGACCTCCTACTAAAAGCACATTGTAAAATATCAATTTGTAAGACAGAACTCTGTTTTAACTCTTAAAGTTTCTTGGGTAGGCTAAGTAGAAAATTAACTCTCATCAGGCTAGGGAGTGCATATTTGAGCAAGGAACATGCTCTGGATAGGCATGTCCACATTAGACTAGCCACTCCCCAAATGATACAGAGGGAAAATAAAGGAAGTCTTCAAGAGCGTTGGAAACTTGTGATTACTCTGTAGTGTCTCTCTGTCTCTGGAATCATGTTTCTTGGTGGGCCATAGGTGGCATCTTACAGTGTGAGGAGGCATGAGCCATTGTCATTCAGGTCACTGCTCTTCCCTTGCACTTGCCTGCCATCCCAGTGTGCCAGGGCGGGCATTGCTCAGACAGAGGGCCTGCCCTAGGATGTGGAGCAGCAGTGTAAGCTGAAAGGAGTGACCGGGAACTCTGCTGAACTCTTGCCCCAGGAGCAGCTAGGATGCGGCTCTCCCCATCTCCTGAGCTGTGCTGAGACGAAGGGCAGAGCAGTGCCTTTTCCTTTTCTGACAGAACCACTTGTAGTCACACTTTGTGTTTCGTTTTAAATTATGAAAAATTTATGGTATACTGTTTCAACCAAGAGTGAAACATGCTTTTATGGATTGGCTCTCGAGAGTGTTTGCTTTATCTAACAAGTGGATTGTGGATGCATATGGCAGTTGCTTGAGGGATCACCATGTCCTCACTATGCTCTGGAGGTCACTCTCCCGTGTTTGCTGTGTGACCCCATCCTCCCTGCTTTGCTCTCATTCACCTGTCTTGGGGTCTGCCTGGCTTCCTAATTTCTCTCATGTGTTGACTAGATAACAGCCAGGATGTTATGTTTCAGCTCTAAGAGGAAAGGGCCAACAGCCTGGTTCCTAGATACATTATCAACTCTGGCATGTTAAAGGAAAGCCAGTAGAAATAAGAAGTGTGGCTTGGGACTTTAGCATGTGAAAAGACCCATCTTAAAACCTTGGCTGTGGCTGCGGTGCTGGTCTTGCTTGCCCTTTGCTCCTGACAAGTGTGTCTGTAGCTCCATCACAGTAGCTTACAAGTGTGCCCGGAGCCTGACAGGCAGGTGGTTGTGAGCATGTGCACTTCATGCTGCTCACAGTCTTCAGAGGGCAGTGTAGCCCTTGACACGTAAAACTGCACACACCTCACTGGGTCTGTGGCCTTATATGAGTCACAAGTACTTTTGCAGATTCTGATTATATGAGGACTTCTTATAACTAGGAGTTTGTCTTCTGGGATTTCTCTCAGCCCCTCGGATGCAGGCCGCTGTGCCTGGTTGCCCTGGTTACTCCACCACTGATCCTCTTTATATCCTTGAGGATATGCAGTTTGTGTGTTACTTGAACTTGCTCTAAAACATTTTATTTTCTTGGTTTCATTTGTGTTACTTGCGCATGGTGCAAATTGTGGGCAAACAAGTCAGGTTTTTCTGGGTCATAAGTAGGTAGGTGTGGTGGGTTCATTTCAGGGCATGATGTGAAAATAGTGTTTGTATTGCTGTTTAATGATTTTTCCTTTTTTTTATTAGGCAAGAAAAAGTCATATTTCCCACGTTGTTCATGGGTAACTCAATTTGTTTGCTGTGCTTTCTTCTCTGTCTTAATCATGCTGTGTGGTGGAAGACACATTAACAAACTGGTTTTACTAACTGCATGGGGTGGACTCAGCTTTAACCAACTTTTAGCCCATGAATAAGCTCTCTTGACCCTGTTTGACTTGATTACCATTGCTGTGACTTGATCACACACACTGTTGCTGCTCTGTAGAACAATAGCCCATCAGGAGTTGAGTGCCTGTGCTCTCAGCTAGTTGAGGGCTGAGGCGGCAGGGGCTTGAGCTCAGGAGTTAGGCCAGCTTGGCAACAGGGTGAGGCACCACTTCAGCAAAAGCTCAGCACAGTGGTCTGGGTGGCTGAGAGTCTCCCTGTGGCAGGATGAAGTTTGAGTTGAGGGGTGGAGGCAGTGCTGGGTTCCAGGATCTCATCTCACTGCCTTCATGGGGATGAGCTCCTCCTGCCTTGGAGTTGCTTCTGTTCTCTCCTTTCAGAAGCTGAAGATAGTGAACTCTCTCTCCCTATGCTTTGGTCTTCACATTGAACTGGGATGGTAAACGGGAGGTGTGTAGACTTGCCCTTCTCTTTCTGAACTGTTGCTATAGCCTGGCTAGAGGCCTGGAGCTGCCTGGAAGTGCTCCAGCCTCTGTTTACACACAGGGAGAATGGGCTCTGGCTGCCCTCCTACTACATTCACAGGTACTCCTTTTCTGCTCTGACAGGCCAAGCTTTGCTCTTTGTATTGTTAGATGGTAGACTGCCCACTTGACTGGCTAAGAAGGTGCAGTTTCTGTTGCTAGAGCATCTTTCTGGATTTGCAGTCAGGTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTCTCCTCTCCCCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCTCCTGCCTCTGCCCCCACCCCCACCCCCCACCCCCGCCTCCCCAGTGTTGGGATTAAAGGCGTGTGCCACCACTGCCCGGCAGTCAGTTTTACCTTAGCTAGACTTGGGGTATAAATTCATGAATTACATGTCTGGAGCCTTTTTTTTTTTTTTTGCATATTTGATTCCTAGTACTGTCTCCATCCTTGCCTGTGCCTTCCATTTAATTCTGGGCATTTATTTCTTCACATTTGCACCTGGTATATTCAAAGGTTTTTCTTCTTTTGGGAATCTTTCTCATTGAATGAATTTAGTTTCCTGGAAGGACCTCTTCAGTCCAAAAACACTTCTGTAGGCCAGCTTTCTTTTCTTCTGGTTTTAACTTCTTACTTCTTGATTCAGAAGAGAAGTGCTAGGTGAGAGCCTCAGCTCAGCCTACTGCCAAGTTCTCCTATTCACACAGAGATGTTACTGGCTTTCTACTAGAGCTCATATGTACTGGGGCATGGAACTGGTTGTTCACTGAGGGCTTCTGAGTGGCTTGTGACTAGAGGCTGGGAAGAGGTAGGACGCCTGGAGATAGCTGGGGCTGAACAACTCACTAACAGCTCAGTGGGCGAACCTGGGCTAATGATTGGATCTTCTCTAGGTTTCCCTCCCTCTGTAACAGTGGAGACGAACTTGATCCTACTTTAAAAGTGCATTTAACTTAGTCCTGTGTCCTGTACCATTTCTGTGTGAGGGACTGTCCTTGTGGCTGCTGCTTTTGCATACCCCAGCAGACCATATGACAAACTCTTGGCAACCTACAGTGTGCCCATGTCTGAGTTGGGGGTATCCTGTCATGTGGTTGAGGACAGGAATGGAGGTTCCTGTGTCAGATACTAGGTCTCCTAGGTAGTTCTTCGTCTGGTGGTCGAGAGCATCAAAGCTGCTCAGGGTCTGTACAGGCAGTGACAGGTGGGGTTGTGCGGCAGGCACTGCACGGGCGGACAGACAGAGTGCCCGAGACCAGGAGGAGCCAGGCCTGCAGCTCTTGCAAAAGGAGATTTAAAGAGCGAGAACTCTGCTGCCGAGCATAGAAGTAGGACAAGGAATGAGGCTACGGGCTGGAGTAGGGTGTATTTCTGTGTATGGCTTAATCCAGATTTCAAGTATGGGCTGTGTTCAGTCTCTTAAAACATGAACTTTTGTTTTGTTTTGTTTTGTTTTTTTGAAACATGAACTCTTGTTTCCTGGTAGTTGTTGTCAAGTTCCTCTGCATGTCTGTTTCTGTGTGCCATTGGTGACTGCTTATGAACCAGTGGTCTTTGCAGGGAATATATGGCTTACTTTTTAGAGAATGTCTTTCCTTGTGAGTCTGTATTCAGGTCCTTGAATCCTTCTGCAACAAGTGGGGGACAGTGTTGGGCAAGAATGATGCATTGTGGCCCCTCAGAGTCACTAATGGGATGGATTCTCCTACCAAGTGTCTTAGACTAGAAAGGCTGAGCTGCCTCCTGAGGTCTGTGTCTTGCCCTCTCCTTTCTCCTCTCCCGGCTTCCTGTGACTGCATGCTGGTGGGTGGGTTTGGGGGTGCCCTCCACCTTGCTGGGTGTGCCTGAATGCTGGCCCTTTGTGGAACTGGGTTGCTGTGTTTAAGAAACAACAAATTTTCTCATCTAGCTTTGCTTGCTAAGCATTAATTTTTTTCACCTTGAGAAACTGGTATTAGAATAGATTTATAACATAATAAATTATAAACCAGTAAAATTTATCTACAACTCAGAGAAGAATACATTTTGTTAAAATTTTCTTCTATGACATAGATGATTATATATGTGTATATATAATATGTATGTATGTATGTATATATATATATATATATATATATACCATAGATTATATGTTTACATATGTGTATGCATCTATATTCATTCTAGACTTAACTACATAGATCATAGTGTCTGTGTAAAAGGCTAGAATAGAATAGAACCTAGGCTGTACACTGCTTGCATTTTCTTTCTTTTTTGGGAGGGGTTTGTTCTGTTTTTTTGTTTTGTTTTGTTTTGAGACAGGGTTTCTCCATGAAGTCCTGAAACTCTCTCTGTAGATGTCCTTGAACTCACAGAGCTCTGCCTGCCTCTGCCTGCCGAGTGCTGGGATTAAAGGCGTGCACCACTACTGCCCTGCTCTTTTCTTTCAAATAAACACTGAACATAGGCAGTTTAGATAGCTTGACCCTTTTTCCTTATATCATTAAATACATTCTGAATATGTTCCTATTAAAAGTACTATAGAATACATTCTTAATAGTAGTATTTATATTTCATTGTTTGTTGTATAATTATTTAATGAGCTCTCAGAAAATCAGAATTTGTTTATGGTGGCTCATATGGCAAAGTTGCCTAGAAAGGTGCACATGGTCTTAGTACCCCAGGATTGAGAACAAGCCATTCTCCAGTGCTTTGAATAGCTGTGATCCTACTGTGGGTAAGGAAGAGGACTAGTTACAGAAAGCAGCTAAGTTTCCTATGTGTAGAGTGATTTTAAATGAGTCTCTTTTTCTTTTTTTCTTCCCTTGCTATTCTGGTCACCCCACAG
Seq C2 exon
GGCAGTAAATGGCTTTGATCCAGCTCCTCCTCCTCCTGGGCTGGGCTCCTCACGCCCATCGTCAGCACCGGGTATGCTGCCTCTCAGTGTGTGAGTGCCCGGCCTCCAGGTGGGGCCCCTGCCCTCTTCCAGCAGCCCAGGACACCTACGCCTCGTCCCTCGGTGCCTGGGTCCAGCCCTGTGCCCCTCTGTCCGCCTCTTCACCGCTGGCAGAGGGCAGGCTGCATGCAGTGGCGGCTGCTGGGCCCTGCCCAGCCCCAGGACTCTGCGCGATATCAATACTGGCTATTTTCTCTTCTCGCCGTAGTGCCGTTGGTTTCACATGATTGCACTTTTGTGGGTCACAAGTGATACATACGTGTATTACTCGATCACTGGATGTGGAAGTACCCATTCATCACATCTGCCTCATAGCCCCCATCTTTGCTGTGCTGATAGGATTTAGTTGTGTTTAGGACATTGCAGATCTTCTAGAAGTTTCCCCTCAATCAGGTTGATAAGACCTTCTAAGCTTCTGCCAAGCATCTTCAGTGCTCACAATCATGTGTCCCCTAGCCTCACCCCTGCAGTTCAGGCCTGTTTCTGTCAGAGTCAGGAACATCTCTGAATTATGGAACATTGTCTGTACCTTCTGACTTTATGTAAGCAGTCCATTCCATTGCTTGTTTCTCAAAGCAGCGAGATACCTGTCTGAGCTGCAGGAGGCAGGGGCAGCCGGGACATGGGCACTTCAGGGCCGAGCCTCTGTGTTGCCTTCTCCTCTGTCCTCAGACTCAGGAGGCAGGTGGCAATCTCCTCGCCAGCATTCCAGGCCCTCAGTTCAATGACATCTCTCAGAGCATTTTTGTTTTCTCCTCTGAAGGTCCATCCAGTTGCATTGGGAAGGGTTGAGGGGCCTGATTCTGGGGCTGGCTAATGCCAGCTCTCGGGGGCAGACTGGCTAGGTGTTTGTCCCTTGCACCCTATGATTATTCTCATGCTGCACTTACTGTTTACATTTGTTTTATTGTACATAGGTTTGTAAACATTATTGCCTAAGATATTTGTATATAACTTGGGCTTTGTAGCTTTTATTTATTCAGACTCATATGGCATGTTAATTAATGACTTACGATGGTGTCCTACTCTGGGCAGCTGTATAGGATCATCATGTGGTTAAAAGAAGATACTTCCCTCCAAAAAAAAATCTTTTAATGTGGAAACAATAAATTTCACAGAAAAAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018736:ENSMUST00000018880:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=NA C2=0.909
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(24.8=100)
A:
NA
C2:
PF048808=NUDE_C=PD(10.4=65.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types