BtaINT0100294 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011994 | NDEL1
Description
nudE neurodevelopment protein 1-like 1 [Source:HGNC Symbol;Acc:HGNC:17620]
Coordinates
chr19:28664181-28672316:+
Coord C1 exon
chr19:28664181-28664332
Coord A exon
chr19:28664333-28671096
Coord C2 exon
chr19:28671097-28672316
Length
6764 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TGCTCTGGTCACTCCCACAGGGC
3' ss Score
9.29
Exon sequences
Seq C1 exon
GCTTTAGAATCCAAATTAGCAGCTTGCAGGAATTTTGCAAAGGACCAAGCATCACGAAAATCCTATATTTCAGGGAATGTTAACTGTGGGGTGATGAATAGCAATGGCACGAAGTTCTCTCGATCAGGGCACACGTCTTTCTTTGACAAAGG
Seq A exon
GTAAGTTTTGGAAATTCTACATGTTAATTTTTGGGTTCATGAAGTTACATATTATTGAGTGAGTTTATTGAACTTCAAAAAGATAAACTCAGTTTGATGAATCTACCTGAATCTACCTGAATGAAGTGTTATCATTCAGATCTTTGGGGATGTGAAATCTGTTATGTCTTCTAGTCCCCATGGAGTCTGTTGCCCTGGGAACCATGACTCTGAAGCTTCTGTCCTGGGAAGCAGACTTGTGAAAGGCAGCCAGGGATTAAAGATGAATGTGATATGGTCCTTGTTTTTTCTCAGGGTGCTTGCAGGATGGTAGACTATCTTGGCAAATATTTGCTAAGAGTAGAAGAGAACATGGTGATCACGTTATGTGTGAACTCTTCAACAAACCTACTGTCTGAAGATTTTAGAGAAAATATAAGACCACTGGATCAAGTAGAGTTGAGGACATAAAAAGTTTTGTAGGATGTGAAGATATTTTGGGGGGAATTGAGAATTAAAAAATTGTCATAAGATTAAAGCAGCAATACATTATTAATACAAAAAAATTTTTGGTGCAGAAAATATATAAAGTAAAAATACGTGTCATCTGTTTTCACACTATTTTTGCATCTTTACAGTTATTCATGTATTCATCTATACAGTTAAGCACGTAAAATCATCTTATGCATCTGCTCTGCTTTTAAAAACTTAGGAGATACCTTAAATACTGCTCGCAACATGCCTATGGTGACTGATACTGCCAGTAGCTTTCCGTGTCAGTACATATTGTTCTGCTTCAATTAAAGGAAAAAAAAAAAGAAAACCACAAAACGCTGCGTGGTTATATTGTTGTATGGGTGTGCCTTGGTCTAGGTAACTGGTTAGAGCCTGTGGTCTGGAATGCTGACCTTGTGACTTAAGGTGGCTGGCAGTGGAATTAGCAGCTGAGGCACCAGTGGTCTGTGTCTCTGCTTTGAGTTAGAGGGGCCATAGGTTCTTGTTCTGTGAAAACAATATAGAAATCTTCATAGTTACCTAAAGGAACTTATATTTTCTGCTTTCCTCAGTGACGGTGGTACATTTGTAGAGAACCTGATTTTTTTAAAAATTTATTTTATATTGGACTATGGCCGATTAACAATGTTGTGATAGTTTTAGGTGGACAGCAAAGGGACTGCACCATACATATACATACGTCCATTCTCCCCCAATGGAGAACCTGATTTGATACGTAGTCCACTCTGTAAGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTAGAAAATCCCATGGATGGAGGAGCTTGGTTAAGCTGCAATCCATGGGGTAGCGAAGAGTTGGACACGACTGAGCTACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTTGGACACAACTGAAGTGACTTAGCAGCAGCAACAACAGCAGCAGCCACTCTGTAAAGCTTTTTGTTGTTCGTCCTTGTGGAGTGGAGTATTCTGGTTTCTCTCTCTCCCTCAAGAATTCTACCTCAAAGTACGTGTATTTCATTAGGGAACATATTCTCAAATAATATATAAATCAGGGCTTTCTTTATACACATTTCATTAAAAGCCCATTCTAAAATATCAACATATAAATCAGAATTTTATTCTAACCATTGGGGCTCCCCAGTGGTGGTAGGAATAAAATTAATATTCCTCAGGTTTAGGAGTTTCAGGCAACCTTGAGGAGTGCCATTTTTCTACTATAATGGTACGTGTGAAATAAAAAGGTAGATATATTTACATTACAGGTGGCATTTCCCCAGAACAATACAGGGAAAGTTTAAGGAAGTCTTCATGAGGGTTGGAAGTAGTGCCTAATGATTTTTCCTGGAGCTTATGACTATTTCCAAACAGTAGTTATTTGTCTGTCTGGAATATTTCTTAATGGGCCGTGGGCCCCATGTGATGTGAGAACAGGCAAAACTGTAAATAGATTGGTCCGGCAGATGCCTTTGCAAAAAAAGAGTCCTTAGAGCAGTCATGACGAAGGAGGCATGATATCATCAGTTCAGGCTCACCATTCTGTCTTCTTACCAGGGCAGTGATTGCCCAGAGAAGAACCCAGTCTAGGCAGATGGCAGAGGATTCAGGGTCACCTGAAACCAGGAGGGGCCCTGGGCACTGTGACAGAGCCCCTGAAGATCCTAGGTGTAGGATAGGCTTTATGTCCTGAACTGAACCTGGAAATATGCTTCTTGATAGAAATAGTTACAGATGGTGTTTAGAATTGTGGAGGACCTGATTAAATAGTACAGATTTTTAATTTTACTCTATTAACAATAAATATTTTTTGTGGTCTGGCCTTTTCTTAAGTGTTAGTTTGTGTAGTAAATAGATGGTATATGCACACTCAGATGTGAACCTGTTATTGCTTGAGTTGTGTGTATCTAGTTGCCGTCTTCCTGAGGATAACTCTTGTGTGGATTTTGCAGTGTTCTTCCTTCTTGATCCTTTGCTTTGATTCTGGCTTCTTTCTGGCCTGCCTGGCTTTTTACCTCTGGCCTTCCTTTCTGCTGACCTAGCAACTAGATAAAAACCATGATGGCTTATACCTGCTGCAAAAGGAAGGGGTAAATATCCCCACTCCCAGCTCCATTATTGCATCTGACTGGTTGAAAGAAAAAGTGCCAGTTCTGGTAGAAACGTAGCTTGTAGTTTCAGCGTGAGAAGAAGCTTTTCATTGGAGAAAAAGCTTTGGCTCCACAAGTTGCCTGGCATGCCTCTCACTCCTAAGGAGTCTGTCTGTGGCTCTGTTAACTGTAGTTTTCCTGGTGCTCCTAGGAGCCCACAGAACGTTGTTTGGGAGAGTTGGTTTGCATGCGTGTGCAAGTATGTGAGTGTACGTGTATGCACTGTACCCTCCTGCGTTCCACAGAATCCTCAGATGGGGTGAGTCTTGACCACATAAACATAAAGCCTTCTTGTTATATATTGCTTTATGGGTTCTGAAAATATTGTGTAAGTTCTGGTTAGTGGAAGGCTTCTTGGAGTCAGGATTTTATCTAGTCTGTGTTCATGTCACCAGTTCCTAAAATGTGGGTCACCGGGCCTGTTTCTCCGTGTTGCTCTGCTTCCTCCAACCTGTACCAGTTGTTCACATTGCTCATCCATAAAGACACTAGTTCACAGGTAGCACAGCTACTTGAGTTCCCCCCAAAATGTTCTTTTTCCTCCATAGCTTTTATTTAGTTTCTTATGCCCTAATTTTGTAAGCCAGTGTGATTTCTTTCAGGCTGTGTGTAGGTGAGTGTAGGCTAATTTTAGGGCATAGTGTGAAAATAGTATTGTGTTACTGTTTAATGTTTTTTCCTTTTTTTATTAGGCAAGAAAAAGTCATATTTCCCACGTTGTTCATGGGTAACTGCATTTGTTTGCTGTGCTCTCTTATTCTTAATCATGGTGTGTGGTGGAAGACGCATTCACATTAACAAACCGGGTTTACTAACTGCATGGGGCTGACTCTACTTTAACCAGCTTCCAGCCCATGAGTGAACTTTCAAGTTTTTGTTTGGTTTGACTGTGTACATTATTATTAGTTCAGCTGTGCAAACAAAAACGAGCAAATGGTAGTGGTCCTGGGGCGGTTGTGAATGGGCTGATGTACTCCTGTACAGGGTGCTGTAGAGAGGACGCCAGCAGTCTGGGGTGGGGGTCAGGGTCACTGCCAGGCTCTGGGACCACATTTGACTGCCTCCATGGGCCTGGGGTGCTTCCTGTTACCCCGTGTCTTCTGTTTTCTCAGCACGGGTGATAGTGGATTCTTGCTGTGTGGGGCCTCTCCTCTGCTCATGCTTGTGTTCCCCAGGAAAGTGGAGTGGTAGCTGGGGACATGTGTGTAAAATCTACCTTCCTTTTGAGGAACGTATGTTTCAGTCTGCAGGGCCTGGGCTGAGGACTGGAGCTGTGCTGGGCTTCCATTTCTCCTTCTAACTGGATGGACGGGTCTGGAGTTGGCCTGTCTGCTCTCCTGAACTAGCTGTAGCGCCTCTGTTCCTTTTCTCTCCTGCCCTCTCAGGTGAACTGTCCTTACTCTGGCAGATTTAGTCCCCAGGCTTTATCTATATTGTGTTAATTTTATTGTCCTTCTGACCAGCTTCTAAACCCTTCTTTTAGTTCTTCTGTTGCCATTTACAACTGACCTTCATTCCTTGTCTTAGCTGAGTTTTCTATTTTTCAGACTCTTAAACTAGATTTTTATGGTAAGATCATGAAATTTCATAGCTTTTGGAACCCTTTTTACATAGATGATTCCCAGATCTGTATCTCCATCCTTGCCCATTCTTTCTCTCTTTGGTCCTGTGTTGTCCACTGGGACATTTCCCTTCAGCTTTTTTGCTGCTCCCTGAGACCAAATGTGGTGAGTATGGAGGTGTTTCTTCTCTCAGAAACCTTTCCTCATTGCACACTTTGCAGTTCCCTCAAGGGACTTCACCAGACTGAGAATTCTCCCTCTGGGTTCAGCTTCCTTCTGGTCTTTTAGTAACTTCTTGACTCAGAGAGGTCCTAGGGAGGACCCTGTTGGATTGTTGTTCTCTCTTCCACCCAACTTTCAAAGTCAGAATTCCCATTTCCAGCCACACAGGGAAGCTATTTAACTTAGTTTCTTGGTTTCTTTTCGTATTTTGGATTGCACTGTGTATTTTTCCTATTAGAGCTGACCTGTATTGGGAGCACCAAGTTGGTTGCGCATGGAGCTTCTCGGACGTCCTTGGGTGGGAGGAGGCTGGGAAAGGATGCTGGCCTGGGTATGCGGAGGCAGGTTGTGGGCCCAGGTCCCCAGTGACAGGCTCACGGGGTGAGCTTGGTGAACAGTGGACCTTCTGTTTTTATTTCCTTGGCAATATAACAGTGGGGATGAACTTGACATTCTTTAAAGGTCCATTACGCTTGAAAATGCAGAAAGCTCAGTTCTAAACCTACATGTGGAGCCATCCTCAAATTTGCTGCTTTTGCCTGCCCTGTGGAACAGGGGTCAGGTTCTTCTTGGTACCCAGCAGTGCTTCCTTCTGCCAAGTTTTGGGGGCTGTCTCTAGCCATGCCTGCTGCCATGCTCTGACAGGCTGGGAATCTGATGGTCAGTGTTCAGGGCTGAAGCTCTTTGTGAGGCCGTCTAGTTCTCCCTGAGGTTCTAGAAGAGGCAGGCATCGGGGCTCGGGGACCAGGCAGACAAATGACAGACAAATGGCTGCTTCTGCGAGTGCAACAATGGCATATAGAGTCTCTGTCCCCAGAAAAGAGGGACAGGCACTTACTCTTGGGAGGATGGAGAGGGATAATTTCAAGTTTTCAAATGTGATGAAGCTCAAAGATCAGACCTCCCCAGCCCAAAGAGAAGAGAAAATTCTGAATGCATCGCTGAGGTGGGGAGAGAACCCTTGTCAGAGCCCCTCCTATTGCTCTTGCCCTGTGTGGGAGGCTTGATTTCCAACTGGAAATCTACACTCAGGTTAGTTTCTTCAGATGTGAACTGTTTCTTCAGAGTAGTCAAGGGTCATTAGTCCAGTCTCTTTGCATGCCTGTTTCTCCATGAGATTACCCTCACCTCCGCAGTGTATGAAACCGTCATCTTGGTGGTGAATGTGTGTCTGTGTTTTGTTTTGTTTAAGAGAATCTCTGTCCATGAGTCTATATATTCAACTCCCCGGGCCCCTCAGATGACTAGGCCAGTGCGGACAGTGGTGGGCATGTGTGGGGCAGTCGGCCCCTTGCAGTTGGCTGCATCTCCCAGGCTGTGAATGAGACCCATTTCCCTAGGAAGTTTTTCAGTATGGAAGGGCTGCAGTGGCTTCCTGAGAGGGGTTCCAGGCCTTGCACTCACTCCCTCACGCCTTCCTGCGGCTGCACTGCCAGGTGGCTGGGGCGGGGCAGGGTCCTGGCTGTGGGCACTTGTGTGGGCGGGGCTGGTGTCTCCTGAGCCTGCAGAGAAGCCTCCCCATCTGGCTTGCTTGCTGAACCATCTAAAAAAGTTATTTTTCTCCCCCTTATTTAAGATATTCATGTACATTGTAGGAGATTTGGAAAACAAAAAAAGTACAAAGTAGTAGATAAAATTTACCCACAACTCAGAGGGAAGAAAAGTAACTACTGTTAAATTTTCCTTTTATGATATATGTGAGTGTGTGTGTATGAGTGCCCGCATCCTCACACATTCTAGATTTAGCTCTGTGGATAGCAATGTCTAGCTATATAAGGGGTTATAGCCCAGAACGTATGCTGTTAATTTTTTTCTTCATATTGTTGAGCATATCCAGTTCGGTAACCTCCTGCTTTTTCCACCTAGCATTAATTGCATTTGGAATATTTTCCATGCTGTTAAGAACTCTGAAATGTATTTTTAAAGGCTGTGCAATATTTCACTGGTTGTACCCTTCTTAGCTGGTTCCCTACTGGTAGACATTTAACCTGCTCTGTTGGGAAGTGAGTCAGGGCTGCAGCCACCATGGCCAGTGTGATGAGGTTGCCGGGAAGAGAGTCATCCCATTGCTGTGGCACTGTGGGGTGCTCAATGCCGTGCTCTCCTTTGGGCCATCAGGATTCTCCTTGGGGCCAGGAAGAGGAATAGTTGTAGAGAGCAGATGAATTATGCTGTGTGTCGAGTGATTTTAAATGACACTGTCTTTCTCTTCTCCTTCCCTTCTCTGCTCTGGTCACTCCCACAG
Seq C2 exon
GGCAGTAAACGGCTTTGACCCGGCTCCTCCTCCTCCTGGTCTGGGCTCCTCGCGCCCGTCATCAGCACCGGGTATGCTGCCGCTCAGTGTGTGAGTGCCCGGCCTCCAGCTGGGGGCTCCTGCCCCACTCCAAGCACCAGGACACCCACGCCTCACCCCTCGGTGCCTGGGCCCAGCTCGTGCCCCTCCGCCCGCCTCCCCACGGCTGGCAGAGGGCAGGCTGCATGCAGTGGCGGCTGCTGGGCCCGGTCCGGCTCCAGGACTCTGCGCGATATCAATACTGGCTATTTTCTCTTCTCGCCGTAGTGCCGTTGGTTTCACATGATTGCACTTTTGTGGGTCACAAGGTGATACATGCGTGTATTACTCGGTCACTGGATGCAGAAGTACCCATTCATCACAGCATCTCCTAGCCCCGCCCTGCTGTACTGATAGGATTTAGTTGTGTTTAGGACATTGCAGATCTTCTAGAAGTTCTTCCCCAAATCAGGTCAACTTGTGGTCTCCTCCTGAGCTCCCAGCCAAGCGTCTCCAGTGCTGATGATCATGTGTTCCCCCCACCCCCCCAGGTTGGGCCTGTGGCTGGTGAAGAGTCAGGAAGGCCACTGAACTAGGGAGCATTTTCTGCACCTTCTGGTTTTACTTTCTCAGTTACCATTCCATAGACTTGCCTCCCCAAGCAGCCACAAAGGCCCGTCTGAGATAGCAGGAGCTTTGGGGCCTGGGTGCTCTCAGGGCTGGGCCCTGCTGTCTCCTCCTCCACTGCCTCAGACTTGGGGGAGGGGGTGGCGGCCGCCCCCTCGGCAGCTCTCTGGTCCTTCAGTGAAATGACATCTTCAGAGCGCTTTTGTTTTGTCTCCGGAGGGCCTGTCCTGTTGTGTCAGGAAGGGTTGCGTGGCCTGATTCCAGGGGCCGGCTGGCGCCAGCTCCGGGGGGCAGACTGACCATAAGTGGTCCTCCCTGTGCATCCTTTGATTACTCTCATGCTGCATTTACTGTTTACATTTGTTTTATTGTACATAGGTTTGTAAACATTATCGCCTAAGATATTTGTATATAACTTGGGCTTTGTAGCTTTTATTTATTCAGAACTCATATGGCATGTTAAAGACTTAACAATGGTGTCCTACTCCGGGCAGCTGTATAGGGTCATCATGTGGTTAAAAAAAATACTTCCCCTCAAAAAAAATCTTTTAATGTGGAAACAATAAATTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011994:ENSBTAT00000065091:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.906
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(24.8=100)
A:
NA
C2:
PF048808=NUDE_C=PD(10.4=65.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development