MmuINT0106835 @ mm9
Intron Retention
Gene
ENSMUSG00000018736 | Ndel1
Description
nuclear distribution gene E-like homolog 1 (A. nidulans) [Source:MGI Symbol;Acc:MGI:1932915]
Coordinates
chr11:68634949-68643568:-
Coord C1 exon
chr11:68643417-68643568
Coord A exon
chr11:68636168-68643416
Coord C2 exon
chr11:68634949-68636167
Length
7249 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CTATTCTGGTCACCCCACAGGGC
3' ss Score
9.14
Exon sequences
Seq C1 exon
GCTTTAGAATCCAAGTTAGCCGCTTGCAGGAACTTTGCAAAAGACCAAGCATCCCGCAAATCTTATGTTCCAGGGAGCGTTAACTGTGGGGTAATGAACAGCAATGGCCCAGAGTGCCCAAGGTCAGGGCGAGCAACTTTCTTCCATAAAGG
Seq A exon
GTAAGTCCTTGACTTTATTTATTTATTTATTTATTTATTTATTTATTTGCAGTTCTAGGGCTGAGACAAAGCTAGGGCTTCATATGTGCCAGACAGTCATCCTGTCCCTGAGCTACAGCCCCAGTCCTTAGACTCACTGATGAGGTCTAGTGAGTTTGCAGAGTCTTAAGTGAGGTTACCAGAGTCCTGAAGGTCACACAGACTAATAAGTTTCCTGCTCTTCTTGTTCAAGTCCCAGAAGAGAGAGATCTGTTATTGTCTTGTGGTTTCCAAGGAGTTTGCTGCCCCTGGAATCTACAGCTTCTTTCCTGGGCATAGACTCTTACAGGCAACTGTGCTGGGCTCAGGAGGATCTGCAGAGCTCCTGTGGGCCTGCTCTCCAGATCCTTACAGCGTGGGAGACTCAGCAAATCTTCTTTAAGGACAGGGGAGATAGTTTGTACATAGCCTGTATGTCAGACCTTTTATTTGAAGATTTTAGAAAAATACAAAGTTCTAAAGTATTTAGACACTGGGTAATATACAAGTGAGAGTCCAAGGCCAGCCTGGTACTTAGTGTGTTTCCAACTGGCTAGAGCTTCATTGTGAGACTGACTTAAAAAAAAAAAAAAAGTGTGTGTGCACGCTTATATTTAAAAACAAAAAAGCTTTAAGCTTAAAGCAGTGGTATATTGTTAGTGAAAACATTTCAGTTGGCATAGAGTATGTGCACTAAAAAGTAAGCTTCCTATTTTCACACTATTGTGGCTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCATTCATTCATGTGTATGAGTACACTGTAGCTGTCTTCAGACACACCAGAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTAGAAGAACAATCAGTGCTCTTAACCGCTGAGCCATCTCACCAGCCCGTGGCCATTTCTTAGAGTTAATTTTCAGGCATGTAAAAATCAGATTTTTATGCATCTGCTGTAAGCTGTTTACAGCACATTTACAAGAGTGCAGTTTAAATATTGCTCAGTAGCTTGCCTGTTTTGATTTACATTGCCGGTATCTTTCCATGTCAGTCTGTTTCATTCTGCCTTGTTTTGTTTTCTCTCTAATATGCATAGCTGTCTTCTTGTTCTAGGTAGGGAGCTAGTTAGGTCCTATACTCTGTCTGCTAGGCACAGTACCTCAGGTAGCTGTTGTTACTGGAACAGCAGCTGCCCTGCTCATGATCCCTCACCATTGTCTCTTGTGAGCCGAATAGGCAGCTTTAAAAACAAAACAGAACAAAGCAGGGACAGCTCTAGAAAACGTCACAGTATTTTTAAAGGTGCTTATATTTCTGATGTCCTCAGTATTTACAGCTTGCTTATGGATGACCCGATTGTTATATACAACTTTGCTGTTGTTTTTGGTTTTGAGACAGACTCTCACTATCGAGCCCTGGTTGTCACGGTGCTCACTCTGTAGACCAGGCTAGCTCTAGCCCACAGATCCACCTGTGCTGGAGCTGCAGGCATGTACCACCATGCTCAGCTGCAGTCTGCTGTGGAAAAGAGTTTTAAGGCCAGGCTTGCTTACATGCTTTTAATTCCTGCCACTGGGGAGGTGAGTTCAAGAGTGGACTACAAAGTGAGTCTAGGAGAGCCAGGGCTACACAGAGAAGCAAGAAACCCCGTCTCAAAAAACCAAAACCGCATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGAGTGGGTGGGTAGGGGAGTGGGTGGGTAGGGGAGAGGGGGTGGGTGGCTATGGGGGACTTTTGGTATAGCATTGCAAATGTAAATGAGCGAAATACCTAATAAAAAATGGAAAAAAAAAAAAAACAAAAAACAAAAAACCAAAACCAAACCAAAAACAAAACAAAAAAAAAAGAATTGTTCATCCTGTAGTGGAGAATCATGGCCTATTTCTGTCTTGAAAAGGATACAACAAGGACCTCCTACTAAAAGCACATTGTAAAATATCAATTTGTAAGACAGAACTCTGTTTTAACTCTTAAAGTTTCTTGGGTAGGCTAAGTAGAAAATTAACTCTCATCAGGCTAGGGAGTGCATATTTGAGCAAGGAACATGCTCTGGATAGGCATGTCCACATTAGACTAGCCACTCCCCAAATGATACAGAGGGAAAATAAAGGAAGTCTTCAAGAGCGTTGGAAACTTGTGATTACTCTGTAGTGTCTCTCTGTCTCTGGAATCATGTTTCTTGGTGGGCCATAGGTGGCATCTTACAGTGTGAGGAGGCATGAGCCATTGTCATTCAGGTCACTGCTCTTCCCTTGCACTTGCCTGCCATCCCAGTGTGCCAGGGCGGGCATTGCTCAGACAGAGGGCCTGCCCTAGGATGTGGAGCAGCAGTGTAAGCTGAAAGGAGTGACCGGGAACTCTGCTGAACTCTTGCCCCAGGAGCAGCTAGGATGCGGCTCTCCCCATCTCCTGAGCTGTGCTGAGACGAAGGGCAGAGCAGTGCCTTTTCCTTTTCTGACAGAACCACTTGTAGTCACACTTTGTGTTTCGTTTTAAATTATGAAAAATTTATGGTATACTGTTTCAACCAAGAGTGAAACATGCTTTTATGGATTGGCTCTCGAGAGTGTTTGCTTTATCTAACAAGTGGATTGTGGATGCATATGGCAGTTGCTTGAGGGATCACCATGTCCTCACTATGCTCTGGAGGTCACTCTCCCGTGTTTGCTGTGTGACCCCATCCTCCCTGCTTTGCTCTCATTCACCTGTCTTGGGGTCTGCCTGGCTTCCTAATTTCTCTCATGTGTTGACTAGATAACAGCCAGGATGTTATGTTTCAGCTCTAAGAGGAAAGGGCCAACAGCCTGGTTCCTAGATACATTATCAACTCTGGCATGTTAAAGGAAAGCCAGTAGAAATAAGAAGTGTGGCTTGGGACTTTAGCATGTGAAAAGACCCATCTTAAAACCTTGGCTGTGGCTGCGGTGCTGGTCTTGCTTGCCCTTTGCTCCTGACAAGTGTGTCTGTAGCTCCATCACAGTAGCTTACAAGTGTGCCCGGAGCCTGACAGGCAGGTGGTTGTGAGCATGTGCACTTCATGCTGCTCACAGTCTTCAGAGGGCAGTGTAGCCCTTGACACGTAAAACTGCACACACCTCACTGGGTCTGTGGCCTTATATGAGTCACAAGTACTTTTGCAGATTCTGATTATATGAGGACTTCTTATAACTAGGAGTTTGTCTTCTGGGATTTCTCTCAGCCCCTCGGATGCAGGCCGCTGTGCCTGGTTGCCCTGGTTACTCCACCACTGATCCTCTTTATATCCTTGAGGATATGCAGTTTGTGTGTTACTTGAACTTGCTCTAAAACATTTTATTTTCTTGGTTTCATTTGTGTTACTTGCGCATGGTGCAAATTGTGGGCAAACAAGTCAGGTTTTTCTGGGTCATAAGTAGGTAGGTGTGGTGGGTTCATTTCAGGGCATGATGTGAAAATAGTGTTTGTATTGCTGTTTAATGATTTTTCCTTTTTTTTATTAGGCAAGAAAAAGTCATATTTCCCACGTTGTTCATGGGTAACTCAATTTGTTTGCTGTGCTTTCTTCTCTGTCTTAATCATGCTGTGTGGTGGAAGACACATTAACAAACTGGTTTTACTAACTGCATGGGGTGGACTCAGCTTTAACCAACTTTTAGCCCATGAATAAGCTCTCTTGACCCTGTTTGACTTGATTACCATTGCTGTGACTTGATCACACACACTGTTGCTGCTCTGTAGAACAATAGCCCATCAGGAGTTGAGTGCCTGTGCTCTCAGCTAGTTGAGGGCTGAGGCGGCAGGGGCTTGAGCTCAGGAGTTAGGCCAGCTTGGCAACAGGGTGAGGCACCACTTCAGCAAAAGCTCAGCACAGTGGTCTGGGTGGCTGAGAGTCTCCCTGTGGCAGGATGAAGTTTGAGTTGAGGGGTGGAGGCAGTGCTGGGTTCCAGGATCTCATCTCACTGCCTTCATGGGGATGAGCTCCTCCTGCCTTGGAGTTGCTTCTGTTCTCTCCTTTCAGAAGCTGAAGATAGTGAACTCTCTCTCCCTATGCTTTGGTCTTCACATTGAACTGGGATGGTAAACGGGAGGTGTGTAGACTTGCCCTTCTCTTTCTGAACTGTTGCTATAGCCTGGCTAGAGGCCTGGAGCTGCCTGGAAGTGCTCCAGCCTCTGTTTACACACAGGGAGAATGGGCTCTGGCTGCCCTCCTACTACATTCACAGGTACTCCTTTTCTGCTCTGACAGGCCAAGCTTTGCTCTTTGTATTGTTAGATGGTAGACTGCCCACTTGACTGGCTAAGAAGGTGCAGTTTCTGTTGCTAGAGCATCTTTCTGGATTTGCAGTCAGGTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTCTCCTCTCCCCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCTCCTGCCTCTGCCCCCACCCCCACCCCCCACCCCCGCCTCCCCAGTGTTGGGATTAAAGGCGTGTGCCACCACTGCCCGGCAGTCAGTTTTACCTTAGCTAGACTTGGGGTATAAATTCATGAATTACATGTCTGGAGCCTTTTTTTTTTTTTTTGCATATTTGATTCCTAGTACTGTCTCCATCCTTGCCTGTGCCTTCCATTTAATTCTGGGCATTTATTTCTTCACATTTGCACCTGGTATATTCAAAGGTTTTTCTTCTTTTGGGAATCTTTCTCATTGAATGAATTTAGTTTCCTGGAAGGACCTCTTCAGTCCAAAAACACTTCTGTAGGCCAGCTTTCTTTTCTTCTGGTTTTAACTTCTTACTTCTTGATTCAGAAGAGAAGTGCTAGGTGAGAGCCTCAGCTCAGCCTACTGCCAAGTTCTCCTATTCACACAGAGATGTTACTGGCTTTCTACTAGAGCTCATATGTACTGGGGCATGGAACTGGTTGTTCACTGAGGGCTTCTGAGTGGCTTGTGACTAGAGGCTGGGAAGAGGTAGGACGCCTGGAGATAGCTGGGGCTGAACAACTCACTAACAGCTCAGTGGGCGAACCTGGGCTAATGATTGGATCTTCTCTAGGTTTCCCTCCCTCTGTAACAGTGGAGACGAACTTGATCCTACTTTAAAAGTGCATTTAACTTAGTCCTGTGTCCTGTACCATTTCTGTGTGAGGGACTGTCCTTGTGGCTGCTGCTTTTGCATACCCCAGCAGACCATATGACAAACTCTTGGCAACCTACAGTGTGCCCATGTCTGAGTTGGGGGTATCCTGTCATGTGGTTGAGGACAGGAATGGAGGTTCCTGTGTCAGATACTAGGTCTCCTAGGTAGTTCTTCGTCTGGTGGTCGAGAGCATCAAAGCTGCTCAGGGTCTGTACAGGCAGTGACAGGTGGGGTTGTGCGGCAGGCACTGCACGGGCGGACAGACAGAGTGCCCGAGACCAGGAGGAGCCAGGCCTGCAGCTCTTGCAAAAGGAGATTTAAAGAGCGAGAACTCTGCTGCCGAGCATAGAAGTAGGACAAGGAATGAGGCTACGGGCTGGAGTAGGGTGTATTTCTGTGTATGGCTTAATCCAGATTTCAAGTATGGGCTGTGTTCAGTCTCTTAAAACATGAACTTTTGTTTTGTTTTGTTTTGTTTTTTTGAAACATGAACTCTTGTTTCCTGGTAGTTGTTGTCAAGTTCCTCTGCATGTCTGTTTCTGTGTGCCATTGGTGACTGCTTATGAACCAGTGGTCTTTGCAGGGAATATATGGCTTACTTTTTAGAGAATGTCTTTCCTTGTGAGTCTGTATTCAGGTCCTTGAATCCTTCTGCAACAAGTGGGGGACAGTGTTGGGCAAGAATGATGCATTGTGGCCCCTCAGAGTCACTAATGGGATGGATTCTCCTACCAAGTGTCTTAGACTAGAAAGGCTGAGCTGCCTCCTGAGGTCTGTGTCTTGCCCTCTCCTTTCTCCTCTCCCGGCTTCCTGTGACTGCATGCTGGTGGGTGGGTTTGGGGGTGCCCTCCACCTTGCTGGGTGTGCCTGAATGCTGGCCCTTTGTGGAACTGGGTTGCTGTGTTTAAGAAACAACAAATTTTCTCATCTAGCTTTGCTTGCTAAGCATTAATTTTTTTCACCTTGAGAAACTGGTATTAGAATAGATTTATAACATAATAAATTATAAACCAGTAAAATTTATCTACAACTCAGAGAAGAATACATTTTGTTAAAATTTTCTTCTATGACATAGATGATTATATATGTGTATATATAATATGTATGTATGTATGTATATATATATATATATATATATATACCATAGATTATATGTTTACATATGTGTATGCATCTATATTCATTCTAGACTTAACTACATAGATCATAGTGTCTGTGTAAAAGGCTAGAATAGAATAGAACCTAGGCTGTACACTGCTTGCATTTTCTTTCTTTTTTGGGAGGGGTTTGTTCTGTTTTTTTGTTTTGTTTTGTTTTGAGACAGGGTTTCTCCATGAAGTCCTGAAACTCTCTCTGTAGATGTCCTTGAACTCACAGAGCTCTGCCTGCCTCTGCCTGCCGAGTGCTGGGATTAAAGGCGTGCACCACTACTGCCCTGCTCTTTTCTTTCAAATAAACACTGAACATAGGCAGTTTAGATAGCTTGACCCTTTTTCCTTATATCATTAAATACATTCTGAATATGTTCCTATTAAAAGTACTATAGAATACATTCTTAATAGTAGTATTTATATTTCATTGTTTGTTGTATAATTATTTAATGAGCTCTCAGAAAATCAGAATTTGTTTATGGTGGCTCATATGGCAAAGTTGCCTAGAAAGGTGCACATGGTCTTAGTACCCCAGGATTGAGAACAAGCCATTCTCCAGTGCTTTGAATAGCTGTGATCCTACTGTGGGTAAGGAAGAGGACTAGTTACAGAAAGCAGCTAAGTTTCCTATGTGTAGAGTGATTTTAAATGAGTCTCTTTTTCTTTTTTTCTTCCCTTGCTATTCTGGTCACCCCACAG
Seq C2 exon
GGCAGTAAATGGCTTTGATCCAGCTCCTCCTCCTCCTGGGCTGGGCTCCTCACGCCCATCGTCAGCACCGGGTATGCTGCCTCTCAGTGTGTGAGTGCCCGGCCTCCAGGTGGGGCCCCTGCCCTCTTCCAGCAGCCCAGGACACCTACGCCTCGTCCCTCGGTGCCTGGGTCCAGCCCTGTGCCCCTCTGTCCGCCTCTTCACCGCTGGCAGAGGGCAGGCTGCATGCAGTGGCGGCTGCTGGGCCCTGCCCAGCCCCAGGACTCTGCGCGATATCAATACTGGCTATTTTCTCTTCTCGCCGTAGTGCCGTTGGTTTCACATGATTGCACTTTTGTGGGTCACAAGTGATACATACGTGTATTACTCGATCACTGGATGTGGAAGTACCCATTCATCACATCTGCCTCATAGCCCCCATCTTTGCTGTGCTGATAGGATTTAGTTGTGTTTAGGACATTGCAGATCTTCTAGAAGTTTCCCCTCAATCAGGTTGATAAGACCTTCTAAGCTTCTGCCAAGCATCTTCAGTGCTCACAATCATGTGTCCCCTAGCCTCACCCCTGCAGTTCAGGCCTGTTTCTGTCAGAGTCAGGAACATCTCTGAATTATGGAACATTGTCTGTACCTTCTGACTTTATGTAAGCAGTCCATTCCATTGCTTGTTTCTCAAAGCAGCGAGATACCTGTCTGAGCTGCAGGAGGCAGGGGCAGCCGGGACATGGGCACTTCAGGGCCGAGCCTCTGTGTTGCCTTCTCCTCTGTCCTCAGACTCAGGAGGCAGGTGGCAATCTCCTCGCCAGCATTCCAGGCCCTCAGTTCAATGACATCTCTCAGAGCATTTTTGTTTTCTCCTCTGAAGGTCCATCCAGTTGCATTGGGAAGGGTTGAGGGGCCTGATTCTGGGGCTGGCTAATGCCAGCTCTCGGGGGCAGACTGGCTAGGTGTTTGTCCCTTGCACCCTATGATTATTCTCATGCTGCACTTACTGTTTACATTTGTTTTATTGTACATAGGTTTGTAAACATTATTGCCTAAGATATTTGTATATAACTTGGGCTTTGTAGCTTTTATTTATTCAGACTCATATGGCATGTTAATTAATGACTTACGATGGTGTCCTACTCTGGGCAGCTGTATAGGATCATCATGTGGTTAAAAGAAGATACTTCCCTCCAAAAAAAAATCTTTTAATGTGGAAACAATAAATTTCACAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018736-Ndel1:NM_023668:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=NA C2=0.909
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(24.8=100)
A:
NA
C2:
PF048808=NUDE_C=PD(10.4=65.6)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: