HsaEX0042214 @ hg19
Exon Skipping
Gene
ENSG00000166579 | NDEL1
Description
nudE nuclear distribution E homolog (A. nidulans)-like 1 [Source:HGNC Symbol;Acc:17620]
Coordinates
chr17:8363327-8393729:+
Coord C1 exon
chr17:8363327-8363478
Coord A exon
chr17:8383783-8385506
Coord C2 exon
chr17:8393565-8393729
Length
1724 bp
Sequences
Splice sites
3' ss Seq
TTGCTCTGCTCCTCTTCCAGCTC
3' ss Score
10.09
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GCTTTAGAATCCAAATTAGCAGCTTGCAGGAATTTTGCAAAGGACCAAGCATCACGAAAATCCTATATTTCAGGGAATGTTAACTGTGGGGTGCTGAATGGCAATGGCACAAAGTTCTCTCGATCAGGGCATACATCTTTCTTCGACAAAGG
Seq A exon
CTCCTCCTCCAGCTGTGCGATCCGAGCTTCCAGACGCCGCTTCTCATCCAGCAGCGCGGACCTGGCGGGGAGAGGAGGAGGGGACGGTTCAATCCCAGCTCAGCACAGCACAGGAGCCTCAGGGAAGGCTCCTCCACCCACCCTGTTGCTGGAAACCTGAGCAGCCATCCTGAATTTTCTCTTTCCCCTGCACTCATCCCCAAATCCATCAGTAGGTCCCACTGATGACACTTCCAAACACCCTCCCCCGCTGCCACCACCCAGATGCAGGCCTGTCATCTCTCACCTGGACTGCTGGGTGGCCTCCCGCTGCCCTGCCTGCCTCTCTCCAGCTGTTCTCCACAGACAACAGCCAGAGTCGCTTTCAAAACGCAAGCACGACCCCAGCCTCCCCACCGCTGAAACTCTTCAGTGGTTTCCAATGCACTGAGAATCAAATTCTAACTACTCATGATGGCATGCTCAAAAAGGCGCATGATGGACGTTCAGTTCAGTAATGACTTTTAACGAAAAAATGAATTCAGAGAAAGGTCCTATCTGAGGAACCTGCTTGCCAAAGCTAGCTGGAAAGTGAAGGCCTGCAGTGCCCGTTGGCGCACCCCACGGCTCCCCCCTGCGGTGTGCAGGGCTCAGCAGGACTGGCACGGGTGCAGTGCCCGTTAGTGCACACCACGGCTCCCACCTGCGGTGTGCAGGGCTCGGCAGGACTGGCACGGGGTACCATGGCTGAGGCAGCCCAGGCCCAGCGAGGGAGGAGCAAACCACCCGCTGATGCCAGGTGTGTGGACACCTCCAGCCTTCTCAGCAGTGCGCGTGCCTGAGGGCGAAGAACCCACCCCCGGCCGTGGGAGACTCACTTGCCAGAGGCGCTGTTGGTGATCTCGTCCGCCAGCTCATCTCTCTCCTGCTCGGCGTGTCGGCGGGCTCGCTCAGATGAGGCAAGTTCCTAAGCAGTGGAGACTGCGTTAAGCTCTGGCTGTGAATAGTTTCCTCACCTGTGGAATCTGACAGTGCCTGGAGCTACAGCGACCTTGCTCCTGTCACTGTTTACCTGCACCTCAAGCTGTCATTTAGATTTGAGAAATTAAACTGTCAAGAAAATCTGCTCGGTGCAGGCCAGCCAGGTGGTGTGTGGTGTCAGCATCTGACACAGATGTCCAGAGGAAAGTCTTCATTGCCATAAGGGCTTTGCTGTCACCTCCAACGTAAGAGGTGGCTATGTTCCTGCCCTTCTTGGAAAGCTGGTGCTTCTTAATATAAACTGAGCATGAACTTTATATAAACCCTGAACCCTAAGAAACATGAGCTATACCAACTGATGGCCCTGAAGTATCTTTCACATAAACAGTTTGAGATCAAGGACGCTGGCTGCACAGACCAGTGCGGATCCAGGCAGCTGTGCCGCAACAAGGATCAATGCTCCCATGGAGAGGAGGCAGGTGGGGGCCTCCGCAGGGGCTCAAGTGTTTGCAGAGCTGGGCCTCTAAGGTGGGCAAGGCCTCTTTCTTGAAGGGGACTGTGGCTCCACAGGGGGCTCTCAGAGGACTGGACAATGGGGACAGCCCTGTGCCTGCCAGCCCACGGGAGGAACTGCCTGATGGCTGCTTTTCCACAAACTTCTTTGGAAGGATGATTTGCCATGGAAAGGAGTCAAGGGTGCATTTATCTTATAAATGAGGAAACTGAGGCCCACCTGGATGAAGATACTGGCCCAAAGTCCCAAG
Seq C2 exon
ATGTGTTCTAACACGAATGAACAGGATACTGACCCAGAGCTGGGCTTTGAGAGCCTGCACCCCTTGTTGTGGAGGCCGCACCCTCTGCCCTACCTGTTTGATCAGCAGCCGCTTCTTCTCTTCATTCTGCTCATCCCTGGTTTGCAGGTCTCTCTCGAACTGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166579_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.660 C2=NA
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(24.8=100)
A:
PF048808=NUDE_C=PD(10.4=38.9)
C2:
PF048808=NUDE_C=PD(10.8=30.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCCAAATTAGCAGCTTGC
R:
GCAGTTCGAGAGAGACCTGC
Band lengths:
310-2034
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)